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Small Microbes Pathway ProfilerSearch ▾
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Small Microbes Pathway ProfilerSearch ▾
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This page shows the number of proteins for the selected PFAM (columns) for that genome (rows).
You can select your own list of genomes in the box below left, and your own selection of PFAMS in the bottom right box. As you pick PFAMS from the list, they will appear as buttons to the right of the box. You can click that button to remove it. Then click the 'Go' button to show the table for your selections
Sessions can be saved: when a search has been done by clicing the 'Go' button, you can save the selections for future use by clicking the 'save selection' button. A link will be provided; copy this link and use it to automatically build this page again.
Enter a sequence to BLASTThe genomes selected are the database to BLAST against. Any PFAM selections will be ignored. Include the header > name on the top line. Blast Database:> (header) Run BLAST Make BLAST DB with selected genomes |
Genome  | ETF (PF01012 IPR014730) | HTH 5 (PF01022 IPR001845) | Carboxyl trans (PF01039 IPR034733) | 2Fe-2S thioredx (PF01257 PF01257) | GFO IDH MocA (PF01408 IPR000683) | Complex1 51K (PF01512 IPR011538) | PTA PTB (PF01515 IPR002505) | BcrAD BadFG (PF01869 IPR002731) |
|---|---|---|---|---|---|---|---|---|
| Syntrophomonas erecta, DSM 16215 IMG: Gs0157275 [cellu] | 6 | 5 | 1 | 5 | 1 | 4 | 1 | 5 |
| Syntrophus buswellii, Sbus IMG: Batch1_genome_fasta/S_buswelii [cellu] | 2 | 1 | 2 | 3 | 5 | 3 | - | 4 |
| Syntrophomonas palmitatica, JCM14374 Spalm IMG: Gs0110775 [cellu] | 7 | 2 | 1 | 3 | 2 | 4 | 1 | 5 |
| Syntrophomonas wolfei (Swol), Goettingen.DSM2245B IMG: Gs0120309 [cellu] | 6 | 3 | 1 | 7 | 1 | 6 | 1 | 6 |
| Syntrophomonas zehnderi, OL-4 Szehn IMG: GCF_000983115.1 [cellu] | 6 | 2 | 1 | 5 | 1 | 5 | 1 | 5 |
| Syntrophus aciditrophicus, SB NCBI:GCF_000013405.1 [cellu] | 2 | 4 | 2 | 8 | 3 | 7 | 6 | 2 |
| Syntrophus gentianae, DSM8423 NCBI:GCF_900109885.1 [cellu] | 2 | 3 | 2 | 6 | 1 | 4 | 1 | 4 |