Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide

Gene activity

Syntrophomonas palmitatica JCM14374 Spalm · 1 genes
1
genes
1
KO-annotated
1
reactions
4
pathways

Activity by pathway — click to expand; ranked by genes involved

DNA replicationGenetic Information Processing; Replication and repair1 genes · 1 rxns
Spalm_01350 K01972 E6.5.1.2, ligA, ligB R00382
NAD+ + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Nicotinamide D-ribonucleotide + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (AMP-forming, NMN-forming)
Base excision repairGenetic Information Processing; Replication and repair1 genes · 1 rxns
Spalm_01350 K01972 E6.5.1.2, ligA, ligB R00382
NAD+ + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Nicotinamide D-ribonucleotide + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (AMP-forming, NMN-forming)
Nucleotide excision repairGenetic Information Processing; Replication and repair1 genes · 1 rxns
Spalm_01350 K01972 E6.5.1.2, ligA, ligB R00382
NAD+ + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Nicotinamide D-ribonucleotide + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (AMP-forming, NMN-forming)
Mismatch repairGenetic Information Processing; Replication and repair1 genes · 1 rxns
Spalm_01350 K01972 E6.5.1.2, ligA, ligB R00382
NAD+ + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Nicotinamide D-ribonucleotide + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (AMP-forming, NMN-forming)

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Spalm_01350 NAD-dependent DNA ligase LigA K01972 E6.5.1.2, ligA, ligB 6.5.1.2 R00382
↑ Top




v1.00 @copyright 2026 UCLA