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Gene activity

Syntrophomonas wolfei methylbutyratica 4J5 · 1 genes
1
genes
1
KO-annotated
4
reactions
5
pathways

Activity by pathway — click to expand; ranked by genes involved

DNA replicationGenetic Information Processing; Replication and repair1 genes · 4 rxns
Swm_01265 K01971 ligD R00381
ATP + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Diphosphate + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (AMP-forming)
Swm_01265 K01971 ligD R00382
NAD+ + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Nicotinamide D-ribonucleotide + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (AMP-forming, NMN-forming)
Swm_01265 K01971 ligD R10822
ADP + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Orthophosphate + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (ADP)
Swm_01265 K01971 ligD R10823
GTP + DNA(n) + 5'-Phospho-DNA(m) <=> GMP + Diphosphate + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (GTP)
Base excision repairGenetic Information Processing; Replication and repair1 genes · 4 rxns
Swm_01265 K01971 ligD R00381
ATP + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Diphosphate + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (AMP-forming)
Swm_01265 K01971 ligD R00382
NAD+ + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Nicotinamide D-ribonucleotide + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (AMP-forming, NMN-forming)
Swm_01265 K01971 ligD R10822
ADP + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Orthophosphate + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (ADP)
Swm_01265 K01971 ligD R10823
GTP + DNA(n) + 5'-Phospho-DNA(m) <=> GMP + Diphosphate + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (GTP)
Nucleotide excision repairGenetic Information Processing; Replication and repair1 genes · 4 rxns
Swm_01265 K01971 ligD R00381
ATP + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Diphosphate + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (AMP-forming)
Swm_01265 K01971 ligD R00382
NAD+ + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Nicotinamide D-ribonucleotide + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (AMP-forming, NMN-forming)
Swm_01265 K01971 ligD R10822
ADP + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Orthophosphate + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (ADP)
Swm_01265 K01971 ligD R10823
GTP + DNA(n) + 5'-Phospho-DNA(m) <=> GMP + Diphosphate + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (GTP)
Mismatch repairGenetic Information Processing; Replication and repair1 genes · 4 rxns
Swm_01265 K01971 ligD R00381
ATP + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Diphosphate + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (AMP-forming)
Swm_01265 K01971 ligD R00382
NAD+ + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Nicotinamide D-ribonucleotide + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (AMP-forming, NMN-forming)
Swm_01265 K01971 ligD R10822
ADP + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Orthophosphate + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (ADP)
Swm_01265 K01971 ligD R10823
GTP + DNA(n) + 5'-Phospho-DNA(m) <=> GMP + Diphosphate + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (GTP)
Non-homologous end-joiningGenetic Information Processing; Replication and repair1 genes · 4 rxns
Swm_01265 K01971 ligD R00381
ATP + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Diphosphate + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (AMP-forming)
Swm_01265 K01971 ligD R00382
NAD+ + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Nicotinamide D-ribonucleotide + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (AMP-forming, NMN-forming)
Swm_01265 K01971 ligD R10822
ADP + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Orthophosphate + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (ADP)
Swm_01265 K01971 ligD R10823
GTP + DNA(n) + 5'-Phospho-DNA(m) <=> GMP + Diphosphate + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (GTP)

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Swm_01265 non-homologous end-joining DNA ligase K01971 ligD; K10747 LIG1 6.5.1.1,6.5.1.6,6.5.1.7 R00381,R00382,R10822,R10823
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