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◀ domain architecture  ·  operons  ·  ❔ guide

Operon NZ_CM161535.1:2,780,149–2,783,644

Syntrophomonas wolfei saponavida · 4 genes
4
genes
4
KO-annotated
6
reactions
3
pathways

Activity by pathway — click to expand; ranked by genes involved

Riboflavin metabolismMetabolism; Metabolism of cofactors and vitamins4 genes · 6 rxns
Sws_02581 K11752 ribD R03458
5-Amino-6-(5'-phospho-D-ribitylamino)uracil + NADP+ <=> 5-Amino-6-(5'-phosphoribosylamino)uracil + NADPH + H+
5-amino-6-(5-phosphoribitylamino)uracil:NADP+ 1'-oxidoreductase
Sws_02581 K11752 ribD R03459
2,5-Diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one + H2O <=> 5-Amino-6-(5'-phosphoribosylamino)uracil + Ammonia
2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine 2-aminohydrolase
Sws_02582 K00793 ribE, RIB5 R00066
2 6,7-Dimethyl-8-(D-ribityl)lumazine <=> Riboflavin + 5-Amino-6-(1-D-ribitylamino)uracil
6,7-dimethyl-8-(1-D-ribityl)lumazine:6,7-dimethyl-8-(1-D-ribityl)lumazine 2,3-butanediyltransferase
Sws_02583 K14652 ribBA R00425
GTP + 4 H2O <=> Formate + 2,5-Diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one + 2 Orthophosphate
GTP 7,8-8,9-dihydrolase (diphosphate-forming)
Sws_02583 K14652 ribBA R07281
D-Ribulose 5-phosphate <=> L-3,4-Dihydroxybutan-2-one 4-phosphate + Formate
D-ribulose 5-phosphate formate-lyase (L-3,4-dihydroxybutan-2-one 4-phosphate-forming)
Sws_02584 K00794 ribH, RIB4 R04457
5-Amino-6-(1-D-ribitylamino)uracil + L-3,4-Dihydroxybutan-2-one 4-phosphate <=> 6,7-Dimethyl-8-(D-ribityl)lumazine + 2 H2O + Orthophosphate
5-amino-6-(D-ribitylamino)uracil butanedionetransferase
Quorum sensingCellular Processes; Cellular community - prokaryotes1 genes · 2 rxns
Sws_02581 K11752 ribD R03458
5-Amino-6-(5'-phospho-D-ribitylamino)uracil + NADP+ <=> 5-Amino-6-(5'-phosphoribosylamino)uracil + NADPH + H+
5-amino-6-(5-phosphoribitylamino)uracil:NADP+ 1'-oxidoreductase
Sws_02581 K11752 ribD R03459
2,5-Diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one + H2O <=> 5-Amino-6-(5'-phosphoribosylamino)uracil + Ammonia
2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine 2-aminohydrolase
Folate biosynthesisMetabolism; Metabolism of cofactors and vitamins1 genes · 2 rxns
Sws_02583 K14652 ribBA R00425
GTP + 4 H2O <=> Formate + 2,5-Diamino-6-(5-phospho-D-ribosylamino)pyrimidin-4(3H)-one + 2 Orthophosphate
GTP 7,8-8,9-dihydrolase (diphosphate-forming)
Sws_02583 K14652 ribBA R07281
D-Ribulose 5-phosphate <=> L-3,4-Dihydroxybutan-2-one 4-phosphate + Formate
D-ribulose 5-phosphate formate-lyase (L-3,4-dihydroxybutan-2-one 4-phosphate-forming)

Overview / global maps (every metabolic gene maps here)

Metabolic pathways 4 genes
Sws_02581 Sws_02582 Sws_02583 Sws_02584
Biosynthesis of secondary metabolites 4 genes
Sws_02581 Sws_02582 Sws_02583 Sws_02584

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Sws_02581 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD K11752 ribD 1.1.1.193,3.5.4.26 R03458,R03459
Sws_02582 riboflavin synthase K00793 ribE, RIB5 2.5.1.9 R00066
Sws_02583 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II K14652 ribBA 3.5.4.25,4.1.99.12 R00425,R07281
Sws_02584 6,7-dimethyl-8-ribityllumazine synthase K00794 ribH, RIB4 2.5.1.78 R04457
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