Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide

Operon NZ_BBCE01000010.1:9,908–10,697

Syntrophomonas palmitatica JCM14374 Spalm · 2 genes
2
genes
2
KO-annotated
3
reactions
2
pathways

Activity by pathway — click to expand; ranked by genes involved

Glycine, serine and threonine metabolismMetabolism; Amino acid metabolism2 genes · 6 rxns
Spalm_01343 K01695 trpA R00674
L-Serine + Indole <=> L-Tryptophan + H2O
L-serine hydro-lyase (adding indole; L-tryptophan-forming)
Spalm_01343 K01695 trpA R02340
Indoleglycerol phosphate <=> Indole + D-Glyceraldehyde 3-phosphate
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate D-glyceraldehyde-3-phosphate-lyase
Spalm_01343 K01695 trpA R02722
L-Serine + Indoleglycerol phosphate <=> L-Tryptophan + D-Glyceraldehyde 3-phosphate + H2O
L-serine hydro-lyase [adding 1-C-(indol-3-yl)glycerol 3-phosphate; L-tryptophan and glyceraldehyde-3-phosphate-forming]
Spalm_01344 K01695 trpA R00674
L-Serine + Indole <=> L-Tryptophan + H2O
L-serine hydro-lyase (adding indole; L-tryptophan-forming)
Spalm_01344 K01695 trpA R02340
Indoleglycerol phosphate <=> Indole + D-Glyceraldehyde 3-phosphate
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate D-glyceraldehyde-3-phosphate-lyase
Spalm_01344 K01695 trpA R02722
L-Serine + Indoleglycerol phosphate <=> L-Tryptophan + D-Glyceraldehyde 3-phosphate + H2O
L-serine hydro-lyase [adding 1-C-(indol-3-yl)glycerol 3-phosphate; L-tryptophan and glyceraldehyde-3-phosphate-forming]
Phenylalanine, tyrosine and tryptophan biosynthesisMetabolism; Amino acid metabolism2 genes · 6 rxns
Spalm_01343 K01695 trpA R00674
L-Serine + Indole <=> L-Tryptophan + H2O
L-serine hydro-lyase (adding indole; L-tryptophan-forming)
Spalm_01343 K01695 trpA R02340
Indoleglycerol phosphate <=> Indole + D-Glyceraldehyde 3-phosphate
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate D-glyceraldehyde-3-phosphate-lyase
Spalm_01343 K01695 trpA R02722
L-Serine + Indoleglycerol phosphate <=> L-Tryptophan + D-Glyceraldehyde 3-phosphate + H2O
L-serine hydro-lyase [adding 1-C-(indol-3-yl)glycerol 3-phosphate; L-tryptophan and glyceraldehyde-3-phosphate-forming]
Spalm_01344 K01695 trpA R00674
L-Serine + Indole <=> L-Tryptophan + H2O
L-serine hydro-lyase (adding indole; L-tryptophan-forming)
Spalm_01344 K01695 trpA R02340
Indoleglycerol phosphate <=> Indole + D-Glyceraldehyde 3-phosphate
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate D-glyceraldehyde-3-phosphate-lyase
Spalm_01344 K01695 trpA R02722
L-Serine + Indoleglycerol phosphate <=> L-Tryptophan + D-Glyceraldehyde 3-phosphate + H2O
L-serine hydro-lyase [adding 1-C-(indol-3-yl)glycerol 3-phosphate; L-tryptophan and glyceraldehyde-3-phosphate-forming]

Overview / global maps (every metabolic gene maps here)

Metabolic pathways 2 genes
Spalm_01343 Spalm_01344
Biosynthesis of secondary metabolites 2 genes
Spalm_01343 Spalm_01344
Map 01130 2 genes
Spalm_01343 Spalm_01344
Biosynthesis of amino acids 2 genes
Spalm_01343 Spalm_01344

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Spalm_01343 hypothetical protein K01695 trpA 4.2.1.20 R00674,R02340,R02722
Spalm_01344 tryptophan synthase subunit alpha K01695 trpA 4.2.1.20 R00674,R02340,R02722
↑ Top




v1.00 @copyright 2026 UCLA