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◀ domain architecture  ·  operons  ·  ❔ guide

Operon NZ_BBCE01000010.1:15,303–22,767

Syntrophomonas palmitatica JCM14374 Spalm · 4 genes
4
genes
3
KO-annotated
1
reactions
8
pathways

Activity by pathway — click to expand; ranked by genes involved

Nucleotide excision repairGenetic Information Processing; Replication and repair2 genes · 1 rxns
Spalm_01349 K03657 uvrD, pcrA
Spalm_01350 K01972 E6.5.1.2, ligA, ligB R00382
NAD+ + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Nicotinamide D-ribonucleotide + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (AMP-forming, NMN-forming)
Mismatch repairGenetic Information Processing; Replication and repair2 genes · 1 rxns
Spalm_01349 K03657 uvrD, pcrA
Spalm_01350 K01972 E6.5.1.2, ligA, ligB R00382
NAD+ + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Nicotinamide D-ribonucleotide + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (AMP-forming, NMN-forming)
Two-component systemEnvironmental Information Processing; Signal transduction1 genes · 0 rxns
Spalm_01347 K07677 rcsC
Biofilm formation - Pseudomonas aeruginosaCellular Processes; Cellular community - prokaryotes1 genes · 0 rxns
Spalm_01347 K07677 rcsC
Biofilm formation - Escherichia coliCellular Processes; Cellular community - prokaryotes1 genes · 0 rxns
Spalm_01347 K07677 rcsC
PertussisHuman Diseases; Infectious disease: bacterial1 genes · 0 rxns
Spalm_01347 K07677 rcsC
DNA replicationGenetic Information Processing; Replication and repair1 genes · 1 rxns
Spalm_01350 K01972 E6.5.1.2, ligA, ligB R00382
NAD+ + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Nicotinamide D-ribonucleotide + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (AMP-forming, NMN-forming)
Base excision repairGenetic Information Processing; Replication and repair1 genes · 1 rxns
Spalm_01350 K01972 E6.5.1.2, ligA, ligB R00382
NAD+ + DNA(n) + 5'-Phospho-DNA(m) <=> AMP + Nicotinamide D-ribonucleotide + DNA(n+m)
(deoxyribonucleotide)n:5'-phospho-(deoxyribonucleotide)m ligase (AMP-forming, NMN-forming)

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Spalm_01347 PAS domain S-box protein K07677 rcsC; K07679 evgS, bvgS; K20974 K20974 2.7.13.3 —
Spalm_01348 sensor domain-containing diguanylate cyclase/phosphohydrolase — — —
Spalm_01349 ATP-dependent helicase K03657 uvrD, pcrA 3.6.4.12 —
Spalm_01350 NAD-dependent DNA ligase LigA K01972 E6.5.1.2, ligA, ligB 6.5.1.2 R00382
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