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◀ domain architecture  ·  operons  ·  ❔ guide

Operon NZ_BBCE01000008.1:25,290–29,667

Syntrophomonas palmitatica JCM14374 Spalm · 6 genes
6
genes
4
KO-annotated
8
reactions
4
pathways

Activity by pathway — click to expand; ranked by genes involved

Purine metabolismMetabolism; Nucleotide metabolism2 genes · 6 rxns
Spalm_01119 K03060 rpoZ R00435
ATP + RNA <=> Diphosphate + RNA
ATP:polynucleotide adenylyltransferase; ATP:RNA adenylyltransferase
Spalm_01119 K03060 rpoZ R00441
GTP + RNA <=> Diphosphate + RNA
GTP:RNA guanylyltransferase (DNA-directed); GTP:RNA guanylyltransferase (RNA-directed)
Spalm_01119 K03060 rpoZ R00442
CTP + RNA <=> Diphosphate + RNA
CTP:RNA cytidylyltransferase (DNA-directed); CTP:RNA cytidylyltransferase (RNA-directed)
Spalm_01119 K03060 rpoZ R00443
UTP + RNA <=> Diphosphate + RNA
UTP:RNA uridylyltransferase
Spalm_01120 K00942 gmk, GUK1 R00332
ATP + GMP <=> ADP + GDP
ATP:GMP phosphotransferase
Spalm_01120 K00942 gmk, GUK1 R02090
ATP + dGMP <=> ADP + dGDP
ATP:dGMP phosphotransferase
Pantothenate and CoA biosynthesisMetabolism; Metabolism of cofactors and vitamins1 genes · 2 rxns
Spalm_01118 K01598 PPCDC, coaC R03269
(R)-4'-Phosphopantothenoyl-L-cysteine <=> Pantetheine 4'-phosphate + CO2
N-[(R)-4'-phosphopantothenoyl]-L-cysteine carboxy-lyase
Spalm_01118 K01598 PPCDC, coaC R04231
CTP + D-4'-Phosphopantothenate + L-Cysteine <=> CMP + Diphosphate + (R)-4'-Phosphopantothenoyl-L-cysteine
(R)-4'-phosphopantothenate:L-cysteine ligase
Pyrimidine metabolismMetabolism; Nucleotide metabolism1 genes · 4 rxns
Spalm_01119 K03060 rpoZ R00435
ATP + RNA <=> Diphosphate + RNA
ATP:polynucleotide adenylyltransferase; ATP:RNA adenylyltransferase
Spalm_01119 K03060 rpoZ R00441
GTP + RNA <=> Diphosphate + RNA
GTP:RNA guanylyltransferase (DNA-directed); GTP:RNA guanylyltransferase (RNA-directed)
Spalm_01119 K03060 rpoZ R00442
CTP + RNA <=> Diphosphate + RNA
CTP:RNA cytidylyltransferase (DNA-directed); CTP:RNA cytidylyltransferase (RNA-directed)
Spalm_01119 K03060 rpoZ R00443
UTP + RNA <=> Diphosphate + RNA
UTP:RNA uridylyltransferase
RNA polymeraseGenetic Information Processing; Transcription1 genes · 4 rxns
Spalm_01119 K03060 rpoZ R00435
ATP + RNA <=> Diphosphate + RNA
ATP:polynucleotide adenylyltransferase; ATP:RNA adenylyltransferase
Spalm_01119 K03060 rpoZ R00441
GTP + RNA <=> Diphosphate + RNA
GTP:RNA guanylyltransferase (DNA-directed); GTP:RNA guanylyltransferase (RNA-directed)
Spalm_01119 K03060 rpoZ R00442
CTP + RNA <=> Diphosphate + RNA
CTP:RNA cytidylyltransferase (DNA-directed); CTP:RNA cytidylyltransferase (RNA-directed)
Spalm_01119 K03060 rpoZ R00443
UTP + RNA <=> Diphosphate + RNA
UTP:RNA uridylyltransferase

Overview / global maps (every metabolic gene maps here)

Metabolic pathways 3 genes
Spalm_01118 Spalm_01119 Spalm_01120

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Spalm_01118 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K01598 PPCDC, coaC; K13038 coaBC, dfp 4.1.1.36,6.3.2.5 R03269,R04231
Spalm_01119 DNA-directed RNA polymerase subunit omega K03060 rpoZ 2.7.7.6 R00435,R00441,R00442,R00443
Spalm_01120 guanylate kinase K00942 gmk, GUK1 2.7.4.8 R00332,R02090
Spalm_01121 extracellular matrix/biofilm regulator RemA K09777 remA — —
Spalm_01122 YicC/YloC family endoribonuclease — — —
Spalm_01123 LL-diaminopimelate aminotransferase — — —
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