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◀ domain architecture  ·  operons  ·  ❔ guide

Operon NZ_BBCE01000020.1:28,760–31,073

Syntrophomonas palmitatica JCM14374 Spalm · 3 genes
3
genes
2
KO-annotated
12
reactions
5
pathways

Activity by pathway — click to expand; ranked by genes involved

Fatty acid biosynthesisMetabolism; Lipid metabolism2 genes · 12 rxns
Spalm_02143 K02372 fabZ R04428
(3R)-3-Hydroxybutanoyl-[acyl-carrier protein] <=> But-2-enoyl-[acyl-carrier protein] + H2O
(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase
Spalm_02143 K02372 fabZ R04535
(3R)-3-Hydroxydecanoyl-[acyl-carrier protein] <=> trans-Dec-2-enoyl-[acp] + H2O
(3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
Spalm_02143 K02372 fabZ R04537
(3R)-3-Hydroxyoctanoyl-[acyl-carrier protein] <=> trans-Oct-2-enoyl-[acp] + H2O
(3R)-3-hydroxyoctanoyl-[acyl-carrier-protein] hydro-lyase
Spalm_02143 K02372 fabZ R04544
(3R)-3-Hydroxypalmitoyl-[acyl-carrier protein] <=> trans-Hexadec-2-enoyl-[acp] + H2O
(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase
Spalm_02143 K02372 fabZ R04568
(3R)-3-Hydroxytetradecanoyl-[acyl-carrier protein] <=> trans-Tetradec-2-enoyl-[acp] + H2O
(3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] hydro-lyase
Spalm_02143 K02372 fabZ R04954
(3R)-3-Hydroxyhexanoyl-[acyl-carrier protein] <=> trans-Hex-2-enoyl-[acp] + H2O
(3R)-3-hydroxyhexanoyl-[acyl-carrier-protein] hydro-lyase
Spalm_02143 K02372 fabZ R04965
(3R)-3-Hydroxydodecanoyl-[acyl-carrier protein] <=> trans-Dodec-2-enoyl-[acp] + H2O
(3R)-3-hydroxydodecanoyl-[acyl-carrier-protein] hydro-lyase
Spalm_02143 K02372 fabZ R07764
(3R)-3-Hydroxyoctadecanoyl-[acyl-carrier protein] <=> (2E)-Octadecenoyl-[acp] + H2O
Spalm_02143 K02372 fabZ R10117
3-Hydroxyglutaryl-[acp] methyl ester <=> Enoylglutaryl-[acp] methyl ester + H2O
3-hydroxyglutaryl-[acp]-methyl-ester hydro-lyase
Spalm_02143 K02372 fabZ R10121
3-Hydroxypimeloyl-[acp] methyl ester <=> Enoylpimeloyl-[acp] methyl ester + H2O
3-hydroxypimeloyl-[acp]-methyl-ester hydro-lyase
Spalm_02145 K01962 accA R00742
ATP + Acetyl-CoA + HCO3- <=> ADP + Orthophosphate + Malonyl-CoA
acetyl-CoA:carbon-dioxide ligase (ADP-forming)
Spalm_02145 K01962 accA R04386
Acetyl-CoA + Carboxybiotin-carboxyl-carrier protein <=> Malonyl-CoA + Holo-[carboxylase]
carboxybiotin-carboxyl-carrier-protein:acetyl-CoA carboxytransferase
Biotin metabolismMetabolism; Metabolism of cofactors and vitamins1 genes · 10 rxns
Spalm_02143 K02372 fabZ R04428
(3R)-3-Hydroxybutanoyl-[acyl-carrier protein] <=> But-2-enoyl-[acyl-carrier protein] + H2O
(3R)-3-hydroxybutanoyl-[acyl-carrier-protein] hydro-lyase
Spalm_02143 K02372 fabZ R04535
(3R)-3-Hydroxydecanoyl-[acyl-carrier protein] <=> trans-Dec-2-enoyl-[acp] + H2O
(3R)-3-hydroxydecanoyl-[acyl-carrier-protein] hydro-lyase
Spalm_02143 K02372 fabZ R04537
(3R)-3-Hydroxyoctanoyl-[acyl-carrier protein] <=> trans-Oct-2-enoyl-[acp] + H2O
(3R)-3-hydroxyoctanoyl-[acyl-carrier-protein] hydro-lyase
Spalm_02143 K02372 fabZ R04544
(3R)-3-Hydroxypalmitoyl-[acyl-carrier protein] <=> trans-Hexadec-2-enoyl-[acp] + H2O
(3R)-3-hydroxypalmitoyl-[acyl-carrier-protein] hydro-lyase
Spalm_02143 K02372 fabZ R04568
(3R)-3-Hydroxytetradecanoyl-[acyl-carrier protein] <=> trans-Tetradec-2-enoyl-[acp] + H2O
(3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] hydro-lyase
Spalm_02143 K02372 fabZ R04954
(3R)-3-Hydroxyhexanoyl-[acyl-carrier protein] <=> trans-Hex-2-enoyl-[acp] + H2O
(3R)-3-hydroxyhexanoyl-[acyl-carrier-protein] hydro-lyase
Spalm_02143 K02372 fabZ R04965
(3R)-3-Hydroxydodecanoyl-[acyl-carrier protein] <=> trans-Dodec-2-enoyl-[acp] + H2O
(3R)-3-hydroxydodecanoyl-[acyl-carrier-protein] hydro-lyase
Spalm_02143 K02372 fabZ R07764
(3R)-3-Hydroxyoctadecanoyl-[acyl-carrier protein] <=> (2E)-Octadecenoyl-[acp] + H2O
Spalm_02143 K02372 fabZ R10117
3-Hydroxyglutaryl-[acp] methyl ester <=> Enoylglutaryl-[acp] methyl ester + H2O
3-hydroxyglutaryl-[acp]-methyl-ester hydro-lyase
Spalm_02143 K02372 fabZ R10121
3-Hydroxypimeloyl-[acp] methyl ester <=> Enoylpimeloyl-[acp] methyl ester + H2O
3-hydroxypimeloyl-[acp]-methyl-ester hydro-lyase
Pyruvate metabolismMetabolism; Carbohydrate metabolism1 genes · 2 rxns
Spalm_02145 K01962 accA R00742
ATP + Acetyl-CoA + HCO3- <=> ADP + Orthophosphate + Malonyl-CoA
acetyl-CoA:carbon-dioxide ligase (ADP-forming)
Spalm_02145 K01962 accA R04386
Acetyl-CoA + Carboxybiotin-carboxyl-carrier protein <=> Malonyl-CoA + Holo-[carboxylase]
carboxybiotin-carboxyl-carrier-protein:acetyl-CoA carboxytransferase
Propanoate metabolismMetabolism; Carbohydrate metabolism1 genes · 2 rxns
Spalm_02145 K01962 accA R00742
ATP + Acetyl-CoA + HCO3- <=> ADP + Orthophosphate + Malonyl-CoA
acetyl-CoA:carbon-dioxide ligase (ADP-forming)
Spalm_02145 K01962 accA R04386
Acetyl-CoA + Carboxybiotin-carboxyl-carrier protein <=> Malonyl-CoA + Holo-[carboxylase]
carboxybiotin-carboxyl-carrier-protein:acetyl-CoA carboxytransferase
Other carbon fixation pathwaysMetabolism; Energy metabolism1 genes · 2 rxns
Spalm_02145 K01962 accA R00742
ATP + Acetyl-CoA + HCO3- <=> ADP + Orthophosphate + Malonyl-CoA
acetyl-CoA:carbon-dioxide ligase (ADP-forming)
Spalm_02145 K01962 accA R04386
Acetyl-CoA + Carboxybiotin-carboxyl-carrier protein <=> Malonyl-CoA + Holo-[carboxylase]
carboxybiotin-carboxyl-carrier-protein:acetyl-CoA carboxytransferase

Overview / global maps (every metabolic gene maps here)

Metabolic pathways 2 genes
Spalm_02143 Spalm_02145
Fatty acid metabolism 2 genes
Spalm_02143 Spalm_02145
Biosynthesis of secondary metabolites 1 genes
Spalm_02145
Microbial metabolism in diverse environments 1 genes
Spalm_02145
Map 01130 1 genes
Spalm_02145
Carbon metabolism 1 genes
Spalm_02145

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Spalm_02143 3-hydroxyacyl-ACP dehydratase FabZ K02372 fabZ 4.2.1.59 R04428,R04535,R04537,R04544,R04568,R04954,R04965,R07764,R10117,R10121
Spalm_02144 acetyl-CoA carboxylase, carboxyltransferase subunit beta — — —
Spalm_02145 acetyl-CoA carboxylase carboxyltransferase subunit alpha K01962 accA 2.1.3.15,6.4.1.2 R00742,R04386
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