Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide

Operon NZ_BBCE01000004.1:139,760–143,518

Syntrophomonas palmitatica JCM14374 Spalm · 5 genes
5
genes
5
KO-annotated
3
reactions
6
pathways

Activity by pathway — click to expand; ranked by genes involved

Cysteine and methionine metabolismMetabolism; Amino acid metabolism1 genes · 1 rxns
Spalm_00730 K00640 cysE R00586
L-Serine + Acetyl-CoA <=> O-Acetyl-L-serine + CoA
acetyl-CoA:L-serine O-acetyltransferase
Sulfur metabolismMetabolism; Energy metabolism1 genes · 1 rxns
Spalm_00730 K00640 cysE R00586
L-Serine + Acetyl-CoA <=> O-Acetyl-L-serine + CoA
acetyl-CoA:L-serine O-acetyltransferase
Biofilm formation - Vibrio choleraeCellular Processes; Cellular community - prokaryotes1 genes · 1 rxns
Spalm_00730 K00640 cysE R00586
L-Serine + Acetyl-CoA <=> O-Acetyl-L-serine + CoA
acetyl-CoA:L-serine O-acetyltransferase
Aminoacyl-tRNA biosynthesisGenetic Information Processing; Translation1 genes · 1 rxns
Spalm_00731 K01883 CARS, cysS R03650
ATP + L-Cysteine + tRNA(Cys) <=> AMP + Diphosphate + L-Cysteinyl-tRNA(Cys)
L-cysteine:tRNA(Cys) ligase (AMP-forming)
Pyrimidine metabolismMetabolism; Nucleotide metabolism1 genes · 1 rxns
Spalm_00733 K03465 thyX, thy1 R06613
5,10-Methylenetetrahydrofolate + dUMP + NADPH + H+ <=> Tetrahydrofolate + dTMP + NADP+
5,10-methylenetetrahydrofolate,NADPH:dUMP C-methyltransferase
One carbon pool by folateMetabolism; Metabolism of cofactors and vitamins1 genes · 1 rxns
Spalm_00733 K03465 thyX, thy1 R06613
5,10-Methylenetetrahydrofolate + dUMP + NADPH + H+ <=> Tetrahydrofolate + dTMP + NADP+
5,10-methylenetetrahydrofolate,NADPH:dUMP C-methyltransferase

Overview / global maps (every metabolic gene maps here)

Metabolic pathways 2 genes
Spalm_00730 Spalm_00733
Biosynthesis of secondary metabolites 1 genes
Spalm_00730
Microbial metabolism in diverse environments 1 genes
Spalm_00730
Carbon metabolism 1 genes
Spalm_00730
Biosynthesis of amino acids 1 genes
Spalm_00730

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Spalm_00730 serine O-acetyltransferase K00640 cysE 2.3.1.30 R00586
Spalm_00731 cysteine--tRNA ligase K01883 CARS, cysS 6.1.1.16 R03650
Spalm_00732 Mini-ribonuclease 3 K11145 mrnC — —
Spalm_00733 FAD-dependent thymidylate synthase K03465 thyX, thy1 2.1.1.148 R06613
Spalm_00734 RNA methyltransferase substrate-binding domain-containing protein K03218 rlmB 2.1.1.185 —
↑ Top




v1.00 @copyright 2026 UCLA