Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide

Operon NZ_BBCE01000003.1:139,789–141,995

Syntrophomonas palmitatica JCM14374 Spalm · 3 genes
3
genes
2
KO-annotated
4
reactions
6
pathways

Activity by pathway — click to expand; ranked by genes involved

Base excision repairGenetic Information Processing; Replication and repair2 genes · 4 rxns
Spalm_00558 K02335 polA R00375
dATP + DNA <=> Diphosphate + DNA
deoxyadenosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Spalm_00558 K02335 polA R00376
dGTP + DNA <=> Diphosphate + DNA
deoxyguanosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Spalm_00558 K02335 polA R00377
dCTP + DNA <=> Diphosphate + DNA
deoxycytidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Spalm_00558 K02335 polA R00378
dTTP + DNA <=> Diphosphate + DNA
deoxythymidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Spalm_00560 K10563 mutM, fpg
Purine metabolismMetabolism; Nucleotide metabolism1 genes · 4 rxns
Spalm_00558 K02335 polA R00375
dATP + DNA <=> Diphosphate + DNA
deoxyadenosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Spalm_00558 K02335 polA R00376
dGTP + DNA <=> Diphosphate + DNA
deoxyguanosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Spalm_00558 K02335 polA R00377
dCTP + DNA <=> Diphosphate + DNA
deoxycytidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Spalm_00558 K02335 polA R00378
dTTP + DNA <=> Diphosphate + DNA
deoxythymidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Pyrimidine metabolismMetabolism; Nucleotide metabolism1 genes · 4 rxns
Spalm_00558 K02335 polA R00375
dATP + DNA <=> Diphosphate + DNA
deoxyadenosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Spalm_00558 K02335 polA R00376
dGTP + DNA <=> Diphosphate + DNA
deoxyguanosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Spalm_00558 K02335 polA R00377
dCTP + DNA <=> Diphosphate + DNA
deoxycytidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Spalm_00558 K02335 polA R00378
dTTP + DNA <=> Diphosphate + DNA
deoxythymidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
DNA replicationGenetic Information Processing; Replication and repair1 genes · 4 rxns
Spalm_00558 K02335 polA R00375
dATP + DNA <=> Diphosphate + DNA
deoxyadenosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Spalm_00558 K02335 polA R00376
dGTP + DNA <=> Diphosphate + DNA
deoxyguanosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Spalm_00558 K02335 polA R00377
dCTP + DNA <=> Diphosphate + DNA
deoxycytidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Spalm_00558 K02335 polA R00378
dTTP + DNA <=> Diphosphate + DNA
deoxythymidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Nucleotide excision repairGenetic Information Processing; Replication and repair1 genes · 4 rxns
Spalm_00558 K02335 polA R00375
dATP + DNA <=> Diphosphate + DNA
deoxyadenosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Spalm_00558 K02335 polA R00376
dGTP + DNA <=> Diphosphate + DNA
deoxyguanosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Spalm_00558 K02335 polA R00377
dCTP + DNA <=> Diphosphate + DNA
deoxycytidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Spalm_00558 K02335 polA R00378
dTTP + DNA <=> Diphosphate + DNA
deoxythymidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Homologous recombinationGenetic Information Processing; Replication and repair1 genes · 4 rxns
Spalm_00558 K02335 polA R00375
dATP + DNA <=> Diphosphate + DNA
deoxyadenosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Spalm_00558 K02335 polA R00376
dGTP + DNA <=> Diphosphate + DNA
deoxyguanosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Spalm_00558 K02335 polA R00377
dCTP + DNA <=> Diphosphate + DNA
deoxycytidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Spalm_00558 K02335 polA R00378
dTTP + DNA <=> Diphosphate + DNA
deoxythymidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)

Overview / global maps (every metabolic gene maps here)

Metabolic pathways 1 genes
Spalm_00558

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Spalm_00558 DNA polymerase I K02335 polA 2.7.7.7 R00375,R00376,R00377,R00378
Spalm_00559 hypothetical protein — — —
Spalm_00560 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase K10563 mutM, fpg 3.2.2.23,4.2.99.18 —
↑ Top




v1.00 @copyright 2026 UCLA