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◀ domain architecture  ·  operons  ·  ❔ guide

Operon NZ_CGIH01000011.1:224–9,251

Syntrophomonas zehnderi OL-4 Szehn · 6 genes
6
genes
5
KO-annotated
6
reactions
11
pathways

Activity by pathway — click to expand; ranked by genes involved

Oxidative phosphorylationMetabolism; Energy metabolism2 genes · 2 rxns
Szeh_00776 K00334 nuoE R11945
Ubiquinone + NADH + H+ + 4 H+ <=> Ubiquinol + NAD+ + 4 H+
NADH:ubiquinone oxidoreductase
Szeh_00777 K00335 nuoF R11945
Ubiquinone + NADH + H+ + 4 H+ <=> Ubiquinol + NAD+ + 4 H+
NADH:ubiquinone oxidoreductase
Selenocompound metabolismMetabolism; Metabolism of other amino acids1 genes · 3 rxns
Szeh_00778 K00123 fdoG, fdhF, fdwA R00134
Formate + NADP+ <=> CO2 + NADPH + H+
formate:NADP+ oxidoreductase
Szeh_00778 K00123 fdoG, fdhF, fdwA R00519
Formate + NAD+ <=> H+ + CO2 + NADH
formate:NAD+ oxidoreductase
Szeh_00778 K00123 fdoG, fdhF, fdwA R07229
Selenite + H2O + Ferricytochrome c <=> Selenate + Ferrocytochrome c
ferricytochrome c:selenite oxidoreductase
Glyoxylate and dicarboxylate metabolismMetabolism; Carbohydrate metabolism1 genes · 3 rxns
Szeh_00778 K00123 fdoG, fdhF, fdwA R00134
Formate + NADP+ <=> CO2 + NADPH + H+
formate:NADP+ oxidoreductase
Szeh_00778 K00123 fdoG, fdhF, fdwA R00519
Formate + NAD+ <=> H+ + CO2 + NADH
formate:NAD+ oxidoreductase
Szeh_00778 K00123 fdoG, fdhF, fdwA R07229
Selenite + H2O + Ferricytochrome c <=> Selenate + Ferrocytochrome c
ferricytochrome c:selenite oxidoreductase
Methane metabolismMetabolism; Energy metabolism1 genes · 3 rxns
Szeh_00778 K00123 fdoG, fdhF, fdwA R00134
Formate + NADP+ <=> CO2 + NADPH + H+
formate:NADP+ oxidoreductase
Szeh_00778 K00123 fdoG, fdhF, fdwA R00519
Formate + NAD+ <=> H+ + CO2 + NADH
formate:NAD+ oxidoreductase
Szeh_00778 K00123 fdoG, fdhF, fdwA R07229
Selenite + H2O + Ferricytochrome c <=> Selenate + Ferrocytochrome c
ferricytochrome c:selenite oxidoreductase
Other carbon fixation pathwaysMetabolism; Energy metabolism1 genes · 3 rxns
Szeh_00778 K00123 fdoG, fdhF, fdwA R00134
Formate + NADP+ <=> CO2 + NADPH + H+
formate:NADP+ oxidoreductase
Szeh_00778 K00123 fdoG, fdhF, fdwA R00519
Formate + NAD+ <=> H+ + CO2 + NADH
formate:NAD+ oxidoreductase
Szeh_00778 K00123 fdoG, fdhF, fdwA R07229
Selenite + H2O + Ferricytochrome c <=> Selenate + Ferrocytochrome c
ferricytochrome c:selenite oxidoreductase
Arginine biosynthesisMetabolism; Amino acid metabolism1 genes · 2 rxns
Szeh_00779 K00261 GLUD1_2, gdhA R00243
L-Glutamate + NAD+ + H2O <=> 2-Oxoglutarate + Ammonia + NADH + H+
L-glutamate:NAD+ oxidoreductase (deaminating)
Szeh_00779 K00261 GLUD1_2, gdhA R00248
L-Glutamate + NADP+ + H2O <=> 2-Oxoglutarate + Ammonia + NADPH + H+
L-glutamate:NADP+ oxidoreductase (deaminating)
Alanine, aspartate and glutamate metabolismMetabolism; Amino acid metabolism1 genes · 2 rxns
Szeh_00779 K00261 GLUD1_2, gdhA R00243
L-Glutamate + NAD+ + H2O <=> 2-Oxoglutarate + Ammonia + NADH + H+
L-glutamate:NAD+ oxidoreductase (deaminating)
Szeh_00779 K00261 GLUD1_2, gdhA R00248
L-Glutamate + NADP+ + H2O <=> 2-Oxoglutarate + Ammonia + NADPH + H+
L-glutamate:NADP+ oxidoreductase (deaminating)
Pathway 004711 genes · 2 rxns
Szeh_00779 K00261 GLUD1_2, gdhA R00243
L-Glutamate + NAD+ + H2O <=> 2-Oxoglutarate + Ammonia + NADH + H+
L-glutamate:NAD+ oxidoreductase (deaminating)
Szeh_00779 K00261 GLUD1_2, gdhA R00248
L-Glutamate + NADP+ + H2O <=> 2-Oxoglutarate + Ammonia + NADPH + H+
L-glutamate:NADP+ oxidoreductase (deaminating)
Nitrogen metabolismMetabolism; Energy metabolism1 genes · 2 rxns
Szeh_00779 K00261 GLUD1_2, gdhA R00243
L-Glutamate + NAD+ + H2O <=> 2-Oxoglutarate + Ammonia + NADH + H+
L-glutamate:NAD+ oxidoreductase (deaminating)
Szeh_00779 K00261 GLUD1_2, gdhA R00248
L-Glutamate + NADP+ + H2O <=> 2-Oxoglutarate + Ammonia + NADPH + H+
L-glutamate:NADP+ oxidoreductase (deaminating)
NecroptosisCellular Processes; Cell growth and death1 genes · 2 rxns
Szeh_00779 K00261 GLUD1_2, gdhA R00243
L-Glutamate + NAD+ + H2O <=> 2-Oxoglutarate + Ammonia + NADH + H+
L-glutamate:NAD+ oxidoreductase (deaminating)
Szeh_00779 K00261 GLUD1_2, gdhA R00248
L-Glutamate + NADP+ + H2O <=> 2-Oxoglutarate + Ammonia + NADPH + H+
L-glutamate:NADP+ oxidoreductase (deaminating)
Proximal tubule bicarbonate reclamationOrganismal Systems; Excretory system1 genes · 2 rxns
Szeh_00779 K00261 GLUD1_2, gdhA R00243
L-Glutamate + NAD+ + H2O <=> 2-Oxoglutarate + Ammonia + NADH + H+
L-glutamate:NAD+ oxidoreductase (deaminating)
Szeh_00779 K00261 GLUD1_2, gdhA R00248
L-Glutamate + NADP+ + H2O <=> 2-Oxoglutarate + Ammonia + NADPH + H+
L-glutamate:NADP+ oxidoreductase (deaminating)

Overview / global maps (every metabolic gene maps here)

Metabolic pathways 4 genes
Szeh_00776 Szeh_00777 Szeh_00778 Szeh_00779
Carbon metabolism 2 genes
Szeh_00778 Szeh_00779
Microbial metabolism in diverse environments 1 genes
Szeh_00778

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Szeh_00776 NADH-quinone oxidoreductase subunit NuoE K00334 nuoE 1.6.5.3 R11945
Szeh_00777 NADH-quinone oxidoreductase subunit NuoF K00335 nuoF; K18331 hndC 1.12.1.3,1.6.5.3 R11945
Szeh_00778 FAD-dependent oxidoreductase K00123 fdoG, fdhF, fdwA; K12527 ygfK; K15022 fdhB 1.17.1.10,1.17.1.9,1.97.1.9 R00134,R00519,R07229
Szeh_00779 NADP-specific glutamate dehydrogenase K00261 GLUD1_2, gdhA; K00262 E1.4.1.4, gdhA 1.4.1.3,1.4.1.4 R00243,R00248
Szeh_00780 peptidyl-prolyl cis-trans isomerase K07533 prsA 5.2.1.8 —
Szeh_00781 cupin domain-containing protein — — —
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