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Nitrogen Fixation CANT-Hyd
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◀ domain architecture  ·  operons  ·  ❔ guide

Operon NZ_CGIH01000046.1:17,143–23,790

Syntrophomonas zehnderi OL-4 Szehn · 6 genes
6
genes
5
KO-annotated
6
reactions
6
pathways

Activity by pathway — click to expand; ranked by genes involved

Aminoacyl-tRNA biosynthesisGenetic Information Processing; Translation3 genes · 6 rxns
Szeh_02429 K02434 gatB, PET112 R03905
Glutaminyl-tRNA + L-Glutamate + Orthophosphate + ADP <=> L-Glutamyl-tRNA(Gln) + L-Glutamine + ATP + H2O
Glu-tRNA(Gln):L-glutamine amido-ligase (ADP-forming)
Szeh_02429 K02434 gatB, PET112 R04212
L-Asparaginyl-tRNA(Asn) + L-Glutamate + Orthophosphate + ADP <=> L-Aspartyl-tRNA(Asn) + L-Glutamine + ATP + H2O
Asp-tRNA(Asn):L-glutamine amido-ligase (ADP-forming)
Szeh_02430 K02433 gatA, QRSL1 R03905
Glutaminyl-tRNA + L-Glutamate + Orthophosphate + ADP <=> L-Glutamyl-tRNA(Gln) + L-Glutamine + ATP + H2O
Glu-tRNA(Gln):L-glutamine amido-ligase (ADP-forming)
Szeh_02430 K02433 gatA, QRSL1 R04212
L-Asparaginyl-tRNA(Asn) + L-Glutamate + Orthophosphate + ADP <=> L-Aspartyl-tRNA(Asn) + L-Glutamine + ATP + H2O
Asp-tRNA(Asn):L-glutamine amido-ligase (ADP-forming)
Szeh_02431 K02435 gatC, GATC R03905
Glutaminyl-tRNA + L-Glutamate + Orthophosphate + ADP <=> L-Glutamyl-tRNA(Gln) + L-Glutamine + ATP + H2O
Glu-tRNA(Gln):L-glutamine amido-ligase (ADP-forming)
Szeh_02431 K02435 gatC, GATC R04212
L-Asparaginyl-tRNA(Asn) + L-Glutamate + Orthophosphate + ADP <=> L-Aspartyl-tRNA(Asn) + L-Glutamine + ATP + H2O
Asp-tRNA(Asn):L-glutamine amido-ligase (ADP-forming)
Citrate cycle (TCA cycle)Metabolism; Carbohydrate metabolism1 genes · 3 rxns
Szeh_02427 K00031 IDH1, IDH2, icd, IDP R00267
Isocitrate + NADP+ <=> 2-Oxoglutarate + CO2 + NADPH + H+
isocitrate:NADP+ oxidoreductase (decarboxylating)
Szeh_02427 K00031 IDH1, IDH2, icd, IDP R00268
Oxalosuccinate <=> 2-Oxoglutarate + CO2
oxalosuccinate carboxy-lyase (2-oxoglutarate-forming)
Szeh_02427 K00031 IDH1, IDH2, icd, IDP R01899
Isocitrate + NADP+ <=> Oxalosuccinate + NADPH + H+
isocitrate:NADP+ oxidoreductase
Glutathione metabolismMetabolism; Metabolism of other amino acids1 genes · 3 rxns
Szeh_02427 K00031 IDH1, IDH2, icd, IDP R00267
Isocitrate + NADP+ <=> 2-Oxoglutarate + CO2 + NADPH + H+
isocitrate:NADP+ oxidoreductase (decarboxylating)
Szeh_02427 K00031 IDH1, IDH2, icd, IDP R00268
Oxalosuccinate <=> 2-Oxoglutarate + CO2
oxalosuccinate carboxy-lyase (2-oxoglutarate-forming)
Szeh_02427 K00031 IDH1, IDH2, icd, IDP R01899
Isocitrate + NADP+ <=> Oxalosuccinate + NADPH + H+
isocitrate:NADP+ oxidoreductase
Other carbon fixation pathwaysMetabolism; Energy metabolism1 genes · 3 rxns
Szeh_02427 K00031 IDH1, IDH2, icd, IDP R00267
Isocitrate + NADP+ <=> 2-Oxoglutarate + CO2 + NADPH + H+
isocitrate:NADP+ oxidoreductase (decarboxylating)
Szeh_02427 K00031 IDH1, IDH2, icd, IDP R00268
Oxalosuccinate <=> 2-Oxoglutarate + CO2
oxalosuccinate carboxy-lyase (2-oxoglutarate-forming)
Szeh_02427 K00031 IDH1, IDH2, icd, IDP R01899
Isocitrate + NADP+ <=> Oxalosuccinate + NADPH + H+
isocitrate:NADP+ oxidoreductase
PeroxisomeCellular Processes; Transport and catabolism1 genes · 3 rxns
Szeh_02427 K00031 IDH1, IDH2, icd, IDP R00267
Isocitrate + NADP+ <=> 2-Oxoglutarate + CO2 + NADPH + H+
isocitrate:NADP+ oxidoreductase (decarboxylating)
Szeh_02427 K00031 IDH1, IDH2, icd, IDP R00268
Oxalosuccinate <=> 2-Oxoglutarate + CO2
oxalosuccinate carboxy-lyase (2-oxoglutarate-forming)
Szeh_02427 K00031 IDH1, IDH2, icd, IDP R01899
Isocitrate + NADP+ <=> Oxalosuccinate + NADPH + H+
isocitrate:NADP+ oxidoreductase
Pyruvate metabolismMetabolism; Carbohydrate metabolism1 genes · 1 rxns
Szeh_02428 K02594 nifV R00271
Acetyl-CoA + H2O + 2-Oxoglutarate <=> (R)-2-Hydroxybutane-1,2,4-tricarboxylate + CoA
acetyl-CoA:2-oxoglutarate C-acetyltransferase (thioester-hydrolysing, carboxymethyl forming)

Overview / global maps (every metabolic gene maps here)

Metabolic pathways 4 genes
Szeh_02427 Szeh_02429 Szeh_02430 Szeh_02431
Biosynthesis of secondary metabolites 1 genes
Szeh_02427
Microbial metabolism in diverse environments 1 genes
Szeh_02427
Map 01130 1 genes
Szeh_02427
Carbon metabolism 1 genes
Szeh_02427
2-Oxocarboxylic acid metabolism 1 genes
Szeh_02427
Biosynthesis of amino acids 1 genes
Szeh_02427

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Szeh_02426 MBL fold metallo-hydrolase — — —
Szeh_02427 NADP-dependent isocitrate dehydrogenase K00031 IDH1, IDH2, icd, IDP 1.1.1.42 R00267,R00268,R01899
Szeh_02428 homocitrate synthase K02594 nifV 2.3.3.14 R00271
Szeh_02429 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB K02434 gatB, PET112 6.3.5.6,6.3.5.7 R03905,R04212
Szeh_02430 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA K02433 gatA, QRSL1 6.3.5.6,6.3.5.7 R03905,R04212
Szeh_02431 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC K02435 gatC, GATC 6.3.5.6,6.3.5.7 R03905,R04212
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