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◀ domain architecture  ·  operons  ·  ❔ guide

Operon NZ_CGIH01000004.1:123,985–129,637

Syntrophomonas zehnderi OL-4 Szehn · 6 genes
6
genes
5
KO-annotated
10
reactions
8
pathways

Activity by pathway — click to expand; ranked by genes involved

Pentose phosphate pathwayMetabolism; Carbohydrate metabolism3 genes · 7 rxns
Szeh_00217 K01624 FBA, fbaA R01068
D-Fructose 1,6-bisphosphate <=> Glycerone phosphate + D-Glyceraldehyde 3-phosphate
D-fructose-1,6-bisphosphate D-glyceraldehyde-3-phosphate-lyase (glycerone-phosphate-forming)
Szeh_00217 K01624 FBA, fbaA R01070
beta-D-Fructose 1,6-bisphosphate <=> Glycerone phosphate + D-Glyceraldehyde 3-phosphate
beta-D-fructose-1,6-bisphosphate D-glyceraldehyde-3-phosphate-lyase (glycerone-phosphate-forming)
Szeh_00217 K01624 FBA, fbaA R01829
Sedoheptulose 1,7-bisphosphate <=> Glycerone phosphate + D-Erythrose 4-phosphate
sedoheptulose 1,7-bisphosphate D-glyceraldehyde-3-phosphate-lyase
Szeh_00217 K01624 FBA, fbaA R02568
D-Fructose 1-phosphate <=> Glycerone phosphate + D-Glyceraldehyde
D-fructose 1-phosphate D-glyceraldehyde-3-phosphate-lyase
Szeh_00218 K00616 TALDO1, talB, talA R01827
Sedoheptulose 7-phosphate + D-Glyceraldehyde 3-phosphate <=> D-Erythrose 4-phosphate + beta-D-Fructose 6-phosphate
sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase
Szeh_00219 K02446 glpX R00762
D-Fructose 1,6-bisphosphate + H2O <=> D-Fructose 6-phosphate + Orthophosphate
D-fructose-1,6-bisphosphate 1-phosphohydrolase
Szeh_00219 K02446 glpX R04780
beta-D-Fructose 1,6-bisphosphate + H2O <=> beta-D-Fructose 6-phosphate + Orthophosphate
beta-D-fructose 1,6-bisphosphate 1-phosphohydrolase
Glycolysis / GluconeogenesisMetabolism; Carbohydrate metabolism2 genes · 6 rxns
Szeh_00217 K01624 FBA, fbaA R01068
D-Fructose 1,6-bisphosphate <=> Glycerone phosphate + D-Glyceraldehyde 3-phosphate
D-fructose-1,6-bisphosphate D-glyceraldehyde-3-phosphate-lyase (glycerone-phosphate-forming)
Szeh_00217 K01624 FBA, fbaA R01070
beta-D-Fructose 1,6-bisphosphate <=> Glycerone phosphate + D-Glyceraldehyde 3-phosphate
beta-D-fructose-1,6-bisphosphate D-glyceraldehyde-3-phosphate-lyase (glycerone-phosphate-forming)
Szeh_00217 K01624 FBA, fbaA R01829
Sedoheptulose 1,7-bisphosphate <=> Glycerone phosphate + D-Erythrose 4-phosphate
sedoheptulose 1,7-bisphosphate D-glyceraldehyde-3-phosphate-lyase
Szeh_00217 K01624 FBA, fbaA R02568
D-Fructose 1-phosphate <=> Glycerone phosphate + D-Glyceraldehyde
D-fructose 1-phosphate D-glyceraldehyde-3-phosphate-lyase
Szeh_00219 K02446 glpX R00762
D-Fructose 1,6-bisphosphate + H2O <=> D-Fructose 6-phosphate + Orthophosphate
D-fructose-1,6-bisphosphate 1-phosphohydrolase
Szeh_00219 K02446 glpX R04780
beta-D-Fructose 1,6-bisphosphate + H2O <=> beta-D-Fructose 6-phosphate + Orthophosphate
beta-D-fructose 1,6-bisphosphate 1-phosphohydrolase
Fructose and mannose metabolismMetabolism; Carbohydrate metabolism2 genes · 6 rxns
Szeh_00217 K01624 FBA, fbaA R01068
D-Fructose 1,6-bisphosphate <=> Glycerone phosphate + D-Glyceraldehyde 3-phosphate
D-fructose-1,6-bisphosphate D-glyceraldehyde-3-phosphate-lyase (glycerone-phosphate-forming)
Szeh_00217 K01624 FBA, fbaA R01070
beta-D-Fructose 1,6-bisphosphate <=> Glycerone phosphate + D-Glyceraldehyde 3-phosphate
beta-D-fructose-1,6-bisphosphate D-glyceraldehyde-3-phosphate-lyase (glycerone-phosphate-forming)
Szeh_00217 K01624 FBA, fbaA R01829
Sedoheptulose 1,7-bisphosphate <=> Glycerone phosphate + D-Erythrose 4-phosphate
sedoheptulose 1,7-bisphosphate D-glyceraldehyde-3-phosphate-lyase
Szeh_00217 K01624 FBA, fbaA R02568
D-Fructose 1-phosphate <=> Glycerone phosphate + D-Glyceraldehyde
D-fructose 1-phosphate D-glyceraldehyde-3-phosphate-lyase
Szeh_00219 K02446 glpX R00762
D-Fructose 1,6-bisphosphate + H2O <=> D-Fructose 6-phosphate + Orthophosphate
D-fructose-1,6-bisphosphate 1-phosphohydrolase
Szeh_00219 K02446 glpX R04780
beta-D-Fructose 1,6-bisphosphate + H2O <=> beta-D-Fructose 6-phosphate + Orthophosphate
beta-D-fructose 1,6-bisphosphate 1-phosphohydrolase
Methane metabolismMetabolism; Energy metabolism2 genes · 6 rxns
Szeh_00217 K01624 FBA, fbaA R01068
D-Fructose 1,6-bisphosphate <=> Glycerone phosphate + D-Glyceraldehyde 3-phosphate
D-fructose-1,6-bisphosphate D-glyceraldehyde-3-phosphate-lyase (glycerone-phosphate-forming)
Szeh_00217 K01624 FBA, fbaA R01070
beta-D-Fructose 1,6-bisphosphate <=> Glycerone phosphate + D-Glyceraldehyde 3-phosphate
beta-D-fructose-1,6-bisphosphate D-glyceraldehyde-3-phosphate-lyase (glycerone-phosphate-forming)
Szeh_00217 K01624 FBA, fbaA R01829
Sedoheptulose 1,7-bisphosphate <=> Glycerone phosphate + D-Erythrose 4-phosphate
sedoheptulose 1,7-bisphosphate D-glyceraldehyde-3-phosphate-lyase
Szeh_00217 K01624 FBA, fbaA R02568
D-Fructose 1-phosphate <=> Glycerone phosphate + D-Glyceraldehyde
D-fructose 1-phosphate D-glyceraldehyde-3-phosphate-lyase
Szeh_00219 K02446 glpX R00762
D-Fructose 1,6-bisphosphate + H2O <=> D-Fructose 6-phosphate + Orthophosphate
D-fructose-1,6-bisphosphate 1-phosphohydrolase
Szeh_00219 K02446 glpX R04780
beta-D-Fructose 1,6-bisphosphate + H2O <=> beta-D-Fructose 6-phosphate + Orthophosphate
beta-D-fructose 1,6-bisphosphate 1-phosphohydrolase
Carbon fixation by Calvin cycleMetabolism; Energy metabolism2 genes · 6 rxns
Szeh_00217 K01624 FBA, fbaA R01068
D-Fructose 1,6-bisphosphate <=> Glycerone phosphate + D-Glyceraldehyde 3-phosphate
D-fructose-1,6-bisphosphate D-glyceraldehyde-3-phosphate-lyase (glycerone-phosphate-forming)
Szeh_00217 K01624 FBA, fbaA R01070
beta-D-Fructose 1,6-bisphosphate <=> Glycerone phosphate + D-Glyceraldehyde 3-phosphate
beta-D-fructose-1,6-bisphosphate D-glyceraldehyde-3-phosphate-lyase (glycerone-phosphate-forming)
Szeh_00217 K01624 FBA, fbaA R01829
Sedoheptulose 1,7-bisphosphate <=> Glycerone phosphate + D-Erythrose 4-phosphate
sedoheptulose 1,7-bisphosphate D-glyceraldehyde-3-phosphate-lyase
Szeh_00217 K01624 FBA, fbaA R02568
D-Fructose 1-phosphate <=> Glycerone phosphate + D-Glyceraldehyde
D-fructose 1-phosphate D-glyceraldehyde-3-phosphate-lyase
Szeh_00219 K02446 glpX R00762
D-Fructose 1,6-bisphosphate + H2O <=> D-Fructose 6-phosphate + Orthophosphate
D-fructose-1,6-bisphosphate 1-phosphohydrolase
Szeh_00219 K02446 glpX R04780
beta-D-Fructose 1,6-bisphosphate + H2O <=> beta-D-Fructose 6-phosphate + Orthophosphate
beta-D-fructose 1,6-bisphosphate 1-phosphohydrolase
Peptidoglycan biosynthesisMetabolism; Glycan biosynthesis and metabolism1 genes · 2 rxns
Szeh_00214 K05363 murM R08776
Glycyl-tRNA(Gly) + Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-D-isoglutaminyl-L-lysyl-D-alanyl-D-alanine <=> tRNA(Gly) + Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-D-isoglutaminyl-L-lysyl-(glycyl)-D-alanyl-D-alanine
glycyl-tRNA:undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-D-isoglutaminyl-L-lysyl-D-alanyl-D-alanine N6-glycyltransferase
Szeh_00214 K05363 murM R08779
L-Alanyl-tRNA + Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-gamma-D-glutamyl-L-lysyl-D-alanyl-D-alanine <=> tRNA(Ala) + Undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-gamma-D-glutamyl-L-lysyl-(L-alanyl)-D-alanyl-D-alanine
L-alanyl-tRNA:undecaprenyl-diphospho-N-acetylmuramoyl-(N-acetylglucosamine)-L-alanyl-gamma-D-glutamyl-L-lysyl-D-alanyl-D-alanine N6-alanyltransferase
Pathway 004731 genes · 1 rxns
Szeh_00215 K01775 alr R00401
L-Alanine <=> D-Alanine
alanine racemase
Vancomycin resistanceHuman Diseases; Drug resistance: antimicrobial1 genes · 1 rxns
Szeh_00215 K01775 alr R00401
L-Alanine <=> D-Alanine
alanine racemase

Overview / global maps (every metabolic gene maps here)

Metabolic pathways 5 genes
Szeh_00214 Szeh_00215 Szeh_00217 Szeh_00218 Szeh_00219
Biosynthesis of secondary metabolites 3 genes
Szeh_00217 Szeh_00218 Szeh_00219
Microbial metabolism in diverse environments 3 genes
Szeh_00217 Szeh_00218 Szeh_00219
Map 01130 3 genes
Szeh_00217 Szeh_00218 Szeh_00219
Carbon metabolism 3 genes
Szeh_00217 Szeh_00218 Szeh_00219
Biosynthesis of amino acids 2 genes
Szeh_00217 Szeh_00218

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Szeh_00214 lipid II:glycine glycyltransferase FemX K05363 murM; K11693 femX, fmhB 2.3.2.10,2.3.2.16 R08776,R08779
Szeh_00215 alanine racemase K01775 alr 5.1.1.1 R00401
Szeh_00216 response regulator — — —
Szeh_00217 class II fructose-1,6-bisphosphate aldolase K01624 FBA, fbaA 4.1.2.13 R01068,R01070,R01829,R02568
Szeh_00218 fructose-6-phosphate aldolase K00616 TALDO1, talB, talA 2.2.1.2 R01827
Szeh_00219 class II fructose-bisphosphatase K02446 glpX 3.1.3.11 R00762,R04780
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