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◀ domain architecture  ·  operons  ·  ❔ guide

Operon NZ_BBCE01000004.1:106,285–109,889

Syntrophomonas palmitatica JCM14374 Spalm · 6 genes
6
genes
3
KO-annotated
4
reactions
9
pathways

Activity by pathway — click to expand; ranked by genes involved

Pentose phosphate pathwayMetabolism; Carbohydrate metabolism1 genes · 2 rxns
Spalm_00697 K01808 rpiB R01056
D-Ribose 5-phosphate <=> D-Ribulose 5-phosphate
D-ribose-5-phosphate aldose-ketose-isomerase
Spalm_00697 K01808 rpiB R09030
D-Allose 6-phosphate <=> D-Allulose 6-phosphate
D-allose-6-phosphate aldose-ketose-isomerase
Fructose and mannose metabolismMetabolism; Carbohydrate metabolism1 genes · 2 rxns
Spalm_00697 K01808 rpiB R01056
D-Ribose 5-phosphate <=> D-Ribulose 5-phosphate
D-ribose-5-phosphate aldose-ketose-isomerase
Spalm_00697 K01808 rpiB R09030
D-Allose 6-phosphate <=> D-Allulose 6-phosphate
D-allose-6-phosphate aldose-ketose-isomerase
Carbon fixation by Calvin cycleMetabolism; Energy metabolism1 genes · 2 rxns
Spalm_00697 K01808 rpiB R01056
D-Ribose 5-phosphate <=> D-Ribulose 5-phosphate
D-ribose-5-phosphate aldose-ketose-isomerase
Spalm_00697 K01808 rpiB R09030
D-Allose 6-phosphate <=> D-Allulose 6-phosphate
D-allose-6-phosphate aldose-ketose-isomerase
Glycine, serine and threonine metabolismMetabolism; Amino acid metabolism1 genes · 2 rxns
Spalm_00698 K00600 glyA, SHMT R00945
5,10-Methylenetetrahydrofolate + Glycine + H2O <=> Tetrahydrofolate + L-Serine
5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase
Spalm_00698 K00600 glyA, SHMT R09099
L-Serine + 5,6,7,8-Tetrahydromethanopterin <=> 5,10-Methylenetetrahydromethanopterin + Glycine + H2O
5,10-methylenetetrahydromethanopterin:glycine hydroxymethyltransferase
Cyanoamino acid metabolismMetabolism; Metabolism of other amino acids1 genes · 2 rxns
Spalm_00698 K00600 glyA, SHMT R00945
5,10-Methylenetetrahydrofolate + Glycine + H2O <=> Tetrahydrofolate + L-Serine
5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase
Spalm_00698 K00600 glyA, SHMT R09099
L-Serine + 5,6,7,8-Tetrahydromethanopterin <=> 5,10-Methylenetetrahydromethanopterin + Glycine + H2O
5,10-methylenetetrahydromethanopterin:glycine hydroxymethyltransferase
Glyoxylate and dicarboxylate metabolismMetabolism; Carbohydrate metabolism1 genes · 2 rxns
Spalm_00698 K00600 glyA, SHMT R00945
5,10-Methylenetetrahydrofolate + Glycine + H2O <=> Tetrahydrofolate + L-Serine
5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase
Spalm_00698 K00600 glyA, SHMT R09099
L-Serine + 5,6,7,8-Tetrahydromethanopterin <=> 5,10-Methylenetetrahydromethanopterin + Glycine + H2O
5,10-methylenetetrahydromethanopterin:glycine hydroxymethyltransferase
One carbon pool by folateMetabolism; Metabolism of cofactors and vitamins1 genes · 2 rxns
Spalm_00698 K00600 glyA, SHMT R00945
5,10-Methylenetetrahydrofolate + Glycine + H2O <=> Tetrahydrofolate + L-Serine
5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase
Spalm_00698 K00600 glyA, SHMT R09099
L-Serine + 5,6,7,8-Tetrahydromethanopterin <=> 5,10-Methylenetetrahydromethanopterin + Glycine + H2O
5,10-methylenetetrahydromethanopterin:glycine hydroxymethyltransferase
Methane metabolismMetabolism; Energy metabolism1 genes · 2 rxns
Spalm_00698 K00600 glyA, SHMT R00945
5,10-Methylenetetrahydrofolate + Glycine + H2O <=> Tetrahydrofolate + L-Serine
5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase
Spalm_00698 K00600 glyA, SHMT R09099
L-Serine + 5,6,7,8-Tetrahydromethanopterin <=> 5,10-Methylenetetrahydromethanopterin + Glycine + H2O
5,10-methylenetetrahydromethanopterin:glycine hydroxymethyltransferase
Antifolate resistanceHuman Diseases; Drug resistance: antineoplastic1 genes · 2 rxns
Spalm_00698 K00600 glyA, SHMT R00945
5,10-Methylenetetrahydrofolate + Glycine + H2O <=> Tetrahydrofolate + L-Serine
5,10-methylenetetrahydrofolate:glycine hydroxymethyltransferase
Spalm_00698 K00600 glyA, SHMT R09099
L-Serine + 5,6,7,8-Tetrahydromethanopterin <=> 5,10-Methylenetetrahydromethanopterin + Glycine + H2O
5,10-methylenetetrahydromethanopterin:glycine hydroxymethyltransferase

Overview / global maps (every metabolic gene maps here)

Metabolic pathways 2 genes
Spalm_00697 Spalm_00698
Biosynthesis of secondary metabolites 2 genes
Spalm_00697 Spalm_00698
Microbial metabolism in diverse environments 2 genes
Spalm_00697 Spalm_00698
Map 01130 2 genes
Spalm_00697 Spalm_00698
Carbon metabolism 2 genes
Spalm_00697 Spalm_00698
Biosynthesis of amino acids 2 genes
Spalm_00697 Spalm_00698

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Spalm_00694 Sua5 family C-terminal domain-containing protein — — —
Spalm_00695 manganese efflux pump MntP — — —
Spalm_00696 low molecular weight protein arginine phosphatase K01104 E3.1.3.48 3.1.3.48 —
Spalm_00697 ribose 5-phosphate isomerase B K01808 rpiB 5.3.1.6 R01056,R09030
Spalm_00698 serine hydroxymethyltransferase K00600 glyA, SHMT 2.1.2.1 R00945,R09099
Spalm_00699 MazG-like family protein — — —
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