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◀ domain architecture  ·  operons  ·  ❔ guide

Operon NC_008346.1:83–9,354

Syntrophomonas wolfei subsp. wolfei Goettingen · 7 genes
7
genes
6
KO-annotated
5
reactions
8
pathways

Activity by pathway — click to expand; ranked by genes involved

Homologous recombinationGenetic Information Processing; Replication and repair2 genes · 4 rxns
Swg_00002 K02338 dnaN R00375
dATP + DNA <=> Diphosphate + DNA
deoxyadenosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swg_00002 K02338 dnaN R00376
dGTP + DNA <=> Diphosphate + DNA
deoxyguanosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swg_00002 K02338 dnaN R00377
dCTP + DNA <=> Diphosphate + DNA
deoxycytidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swg_00002 K02338 dnaN R00378
dTTP + DNA <=> Diphosphate + DNA
deoxythymidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swg_00003 K03629 recF
Two-component systemEnvironmental Information Processing; Signal transduction1 genes · 0 rxns
Swg_00001 K02313 dnaA
Cell cycle - CaulobacterCellular Processes; Cell growth and death1 genes · 0 rxns
Swg_00001 K02313 dnaA
Purine metabolismMetabolism; Nucleotide metabolism1 genes · 4 rxns
Swg_00002 K02338 dnaN R00375
dATP + DNA <=> Diphosphate + DNA
deoxyadenosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swg_00002 K02338 dnaN R00376
dGTP + DNA <=> Diphosphate + DNA
deoxyguanosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swg_00002 K02338 dnaN R00377
dCTP + DNA <=> Diphosphate + DNA
deoxycytidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swg_00002 K02338 dnaN R00378
dTTP + DNA <=> Diphosphate + DNA
deoxythymidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Pyrimidine metabolismMetabolism; Nucleotide metabolism1 genes · 4 rxns
Swg_00002 K02338 dnaN R00375
dATP + DNA <=> Diphosphate + DNA
deoxyadenosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swg_00002 K02338 dnaN R00376
dGTP + DNA <=> Diphosphate + DNA
deoxyguanosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swg_00002 K02338 dnaN R00377
dCTP + DNA <=> Diphosphate + DNA
deoxycytidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swg_00002 K02338 dnaN R00378
dTTP + DNA <=> Diphosphate + DNA
deoxythymidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
DNA replicationGenetic Information Processing; Replication and repair1 genes · 4 rxns
Swg_00002 K02338 dnaN R00375
dATP + DNA <=> Diphosphate + DNA
deoxyadenosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swg_00002 K02338 dnaN R00376
dGTP + DNA <=> Diphosphate + DNA
deoxyguanosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swg_00002 K02338 dnaN R00377
dCTP + DNA <=> Diphosphate + DNA
deoxycytidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swg_00002 K02338 dnaN R00378
dTTP + DNA <=> Diphosphate + DNA
deoxythymidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Mismatch repairGenetic Information Processing; Replication and repair1 genes · 4 rxns
Swg_00002 K02338 dnaN R00375
dATP + DNA <=> Diphosphate + DNA
deoxyadenosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swg_00002 K02338 dnaN R00376
dGTP + DNA <=> Diphosphate + DNA
deoxyguanosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swg_00002 K02338 dnaN R00377
dCTP + DNA <=> Diphosphate + DNA
deoxycytidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swg_00002 K02338 dnaN R00378
dTTP + DNA <=> Diphosphate + DNA
deoxythymidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Vitamin B6 metabolismMetabolism; Metabolism of cofactors and vitamins1 genes · 1 rxns
Swg_00007 K06215 pdxS, pdx1 R07456
D-Glyceraldehyde 3-phosphate + D-Ribulose 5-phosphate + L-Glutamine <=> Pyridoxal phosphate + L-Glutamate + Orthophosphate + 3 H2O
D-ribulose 5-phosphate,D-glyceraldehyde 3-phosphate pyridoxal 5'-phosphate-lyase

Overview / global maps (every metabolic gene maps here)

Metabolic pathways 1 genes
Swg_00002

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Swg_00001 chromosomal replication initiator protein DnaA K02313 dnaA — —
Swg_00002 DNA polymerase III subunit beta K02338 dnaN 2.7.7.7 R00375,R00376,R00377,R00378
Swg_00003 DNA replication/repair protein RecF K03629 recF — —
Swg_00004 extracellular matrix regulator RemB — — —
Swg_00005 DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB 5.99.1.3 —
Swg_00006 DNA gyrase subunit A K02469 gyrA 5.99.1.3 —
Swg_00007 pyridoxal 5'-phosphate synthase lyase subunit PdxS K06215 pdxS, pdx1 4.3.3.6 R07456
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