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◀ domain architecture  ·  operons  ·  ❔ guide

Operon NZ_CM161534.1:1,456–9,265

Syntrophomonas wolfei methylbutyratica 4J5 · 6 genes
6
genes
5
KO-annotated
5
reactions
6
pathways

Activity by pathway — click to expand; ranked by genes involved

Homologous recombinationGenetic Information Processing; Replication and repair2 genes · 4 rxns
Swm_00002 K02338 dnaN R00375
dATP + DNA <=> Diphosphate + DNA
deoxyadenosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swm_00002 K02338 dnaN R00376
dGTP + DNA <=> Diphosphate + DNA
deoxyguanosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swm_00002 K02338 dnaN R00377
dCTP + DNA <=> Diphosphate + DNA
deoxycytidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swm_00002 K02338 dnaN R00378
dTTP + DNA <=> Diphosphate + DNA
deoxythymidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swm_00003 K03629 recF
Purine metabolismMetabolism; Nucleotide metabolism1 genes · 4 rxns
Swm_00002 K02338 dnaN R00375
dATP + DNA <=> Diphosphate + DNA
deoxyadenosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swm_00002 K02338 dnaN R00376
dGTP + DNA <=> Diphosphate + DNA
deoxyguanosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swm_00002 K02338 dnaN R00377
dCTP + DNA <=> Diphosphate + DNA
deoxycytidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swm_00002 K02338 dnaN R00378
dTTP + DNA <=> Diphosphate + DNA
deoxythymidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Pyrimidine metabolismMetabolism; Nucleotide metabolism1 genes · 4 rxns
Swm_00002 K02338 dnaN R00375
dATP + DNA <=> Diphosphate + DNA
deoxyadenosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swm_00002 K02338 dnaN R00376
dGTP + DNA <=> Diphosphate + DNA
deoxyguanosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swm_00002 K02338 dnaN R00377
dCTP + DNA <=> Diphosphate + DNA
deoxycytidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swm_00002 K02338 dnaN R00378
dTTP + DNA <=> Diphosphate + DNA
deoxythymidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
DNA replicationGenetic Information Processing; Replication and repair1 genes · 4 rxns
Swm_00002 K02338 dnaN R00375
dATP + DNA <=> Diphosphate + DNA
deoxyadenosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swm_00002 K02338 dnaN R00376
dGTP + DNA <=> Diphosphate + DNA
deoxyguanosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swm_00002 K02338 dnaN R00377
dCTP + DNA <=> Diphosphate + DNA
deoxycytidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swm_00002 K02338 dnaN R00378
dTTP + DNA <=> Diphosphate + DNA
deoxythymidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Mismatch repairGenetic Information Processing; Replication and repair1 genes · 4 rxns
Swm_00002 K02338 dnaN R00375
dATP + DNA <=> Diphosphate + DNA
deoxyadenosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swm_00002 K02338 dnaN R00376
dGTP + DNA <=> Diphosphate + DNA
deoxyguanosine 5'-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swm_00002 K02338 dnaN R00377
dCTP + DNA <=> Diphosphate + DNA
deoxycytidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Swm_00002 K02338 dnaN R00378
dTTP + DNA <=> Diphosphate + DNA
deoxythymidine triphosphate:DNA deoxynucleotidyltransferase (DNA-directed)
Vitamin B6 metabolismMetabolism; Metabolism of cofactors and vitamins1 genes · 1 rxns
Swm_00007 K06215 pdxS, pdx1 R07456
D-Glyceraldehyde 3-phosphate + D-Ribulose 5-phosphate + L-Glutamine <=> Pyridoxal phosphate + L-Glutamate + Orthophosphate + 3 H2O
D-ribulose 5-phosphate,D-glyceraldehyde 3-phosphate pyridoxal 5'-phosphate-lyase

Overview / global maps (every metabolic gene maps here)

Metabolic pathways 1 genes
Swm_00002

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Swm_00002 DNA polymerase III subunit beta K02338 dnaN 2.7.7.7 R00375,R00376,R00377,R00378
Swm_00003 DNA replication/repair protein RecF K03629 recF — —
Swm_00004 extracellular matrix regulator RemB — — —
Swm_00005 DNA topoisomerase (ATP-hydrolyzing) subunit B K02470 gyrB 5.99.1.3 —
Swm_00006 DNA gyrase subunit A K02469 gyrA 5.99.1.3 —
Swm_00007 pyridoxal 5'-phosphate synthase lyase subunit PdxS K06215 pdxS, pdx1 4.3.3.6 R07456
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