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◀ domain architecture  ·  operons  ·  ❔ guide

Operon NZ_CM161534.1:285,037–292,010

Syntrophomonas wolfei methylbutyratica 4J5 · 6 genes
6
genes
5
KO-annotated
4
reactions
9
pathways

Activity by pathway — click to expand; ranked by genes involved

Glycolysis / GluconeogenesisMetabolism; Carbohydrate metabolism4 genes · 4 rxns
Swm_00245 K00134 GAPDH, gapA R01061
D-Glyceraldehyde 3-phosphate + Orthophosphate + NAD+ <=> 3-Phospho-D-glyceroyl phosphate + NADH + H+
D-glyceraldehyde-3-phosphate:NAD+ oxidoreductase (phosphorylating)
Swm_00247 K01803 TPI, tpiA R01015
D-Glyceraldehyde 3-phosphate <=> Glycerone phosphate
D-glyceraldehyde-3-phosphate aldose-ketose-isomerase
Swm_00248 K15633 gpmI R01518
2-Phospho-D-glycerate <=> 3-Phospho-D-glycerate
D-phosphoglycerate 2,3-phosphomutase
Swm_00249 K01689 ENO1_2_3, eno R00658
2-Phospho-D-glycerate <=> Phosphoenolpyruvate + H2O
2-phospho-D-glycerate hydro-lyase (phosphoenolpyruvate-forming)
Carbon fixation by Calvin cycleMetabolism; Energy metabolism2 genes · 2 rxns
Swm_00245 K00134 GAPDH, gapA R01061
D-Glyceraldehyde 3-phosphate + Orthophosphate + NAD+ <=> 3-Phospho-D-glyceroyl phosphate + NADH + H+
D-glyceraldehyde-3-phosphate:NAD+ oxidoreductase (phosphorylating)
Swm_00247 K01803 TPI, tpiA R01015
D-Glyceraldehyde 3-phosphate <=> Glycerone phosphate
D-glyceraldehyde-3-phosphate aldose-ketose-isomerase
HIF-1 signaling pathwayEnvironmental Information Processing; Signal transduction2 genes · 2 rxns
Swm_00245 K00134 GAPDH, gapA R01061
D-Glyceraldehyde 3-phosphate + Orthophosphate + NAD+ <=> 3-Phospho-D-glyceroyl phosphate + NADH + H+
D-glyceraldehyde-3-phosphate:NAD+ oxidoreductase (phosphorylating)
Swm_00249 K01689 ENO1_2_3, eno R00658
2-Phospho-D-glycerate <=> Phosphoenolpyruvate + H2O
2-phospho-D-glycerate hydro-lyase (phosphoenolpyruvate-forming)
Methane metabolismMetabolism; Energy metabolism2 genes · 2 rxns
Swm_00248 K15633 gpmI R01518
2-Phospho-D-glycerate <=> 3-Phospho-D-glycerate
D-phosphoglycerate 2,3-phosphomutase
Swm_00249 K01689 ENO1_2_3, eno R00658
2-Phospho-D-glycerate <=> Phosphoenolpyruvate + H2O
2-phospho-D-glycerate hydro-lyase (phosphoenolpyruvate-forming)
Alzheimer diseaseHuman Diseases; Neurodegenerative disease1 genes · 1 rxns
Swm_00245 K00134 GAPDH, gapA R01061
D-Glyceraldehyde 3-phosphate + Orthophosphate + NAD+ <=> 3-Phospho-D-glyceroyl phosphate + NADH + H+
D-glyceraldehyde-3-phosphate:NAD+ oxidoreductase (phosphorylating)
Fructose and mannose metabolismMetabolism; Carbohydrate metabolism1 genes · 1 rxns
Swm_00247 K01803 TPI, tpiA R01015
D-Glyceraldehyde 3-phosphate <=> Glycerone phosphate
D-glyceraldehyde-3-phosphate aldose-ketose-isomerase
Inositol phosphate metabolismMetabolism; Carbohydrate metabolism1 genes · 1 rxns
Swm_00247 K01803 TPI, tpiA R01015
D-Glyceraldehyde 3-phosphate <=> Glycerone phosphate
D-glyceraldehyde-3-phosphate aldose-ketose-isomerase
Glycine, serine and threonine metabolismMetabolism; Amino acid metabolism1 genes · 1 rxns
Swm_00248 K15633 gpmI R01518
2-Phospho-D-glycerate <=> 3-Phospho-D-glycerate
D-phosphoglycerate 2,3-phosphomutase
RNA degradationGenetic Information Processing; Folding, sorting and degradation1 genes · 1 rxns
Swm_00249 K01689 ENO1_2_3, eno R00658
2-Phospho-D-glycerate <=> Phosphoenolpyruvate + H2O
2-phospho-D-glycerate hydro-lyase (phosphoenolpyruvate-forming)

Overview / global maps (every metabolic gene maps here)

Metabolic pathways 4 genes
Swm_00245 Swm_00247 Swm_00248 Swm_00249
Biosynthesis of secondary metabolites 4 genes
Swm_00245 Swm_00247 Swm_00248 Swm_00249
Microbial metabolism in diverse environments 4 genes
Swm_00245 Swm_00247 Swm_00248 Swm_00249
Map 01130 4 genes
Swm_00245 Swm_00247 Swm_00248 Swm_00249
Carbon metabolism 4 genes
Swm_00245 Swm_00247 Swm_00248 Swm_00249
Biosynthesis of amino acids 4 genes
Swm_00245 Swm_00247 Swm_00248 Swm_00249

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Swm_00244 sugar-binding transcriptional regulator K05311 cggR — —
Swm_00245 type I glyceraldehyde-3-phosphate dehydrogenase K00134 GAPDH, gapA 1.2.1.12 R01061
Swm_00246 phosphoglycerate kinase — — —
Swm_00247 triose-phosphate isomerase K01803 TPI, tpiA 5.3.1.1 R01015
Swm_00248 2,3-bisphosphoglycerate-independent phosphoglycerate mutase K15633 gpmI 5.4.2.12 R01518
Swm_00249 phosphopyruvate hydratase K01689 ENO1_2_3, eno 4.2.1.11 R00658
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