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◀ domain architecture  ·  operons  ·  ❔ guide

Operon NZ_CM161534.1:665,439–668,621

Syntrophomonas wolfei methylbutyratica 4J5 · 4 genes
4
genes
4
KO-annotated
5
reactions
4
pathways

Activity by pathway — click to expand; ranked by genes involved

Mismatch repairGenetic Information Processing; Replication and repair2 genes · 0 rxns
Swm_00585 K03601 xseA
Swm_00586 K03602 xseB
One carbon pool by folateMetabolism; Metabolism of cofactors and vitamins1 genes · 2 rxns
Swm_00584 K01491 folD R01220
5,10-Methylenetetrahydrofolate + NADP+ <=> 5,10-Methenyltetrahydrofolate + NADPH
5,10-methylenetetrahydrofolate:NADP+ oxidoreductase
Swm_00584 K01491 folD R01655
5,10-Methenyltetrahydrofolate + H2O <=> 10-Formyltetrahydrofolate + H+
5,10-methenyltetrahydrofolate 5-hydrolase (decyclizing)
Other carbon fixation pathwaysMetabolism; Energy metabolism1 genes · 2 rxns
Swm_00584 K01491 folD R01220
5,10-Methylenetetrahydrofolate + NADP+ <=> 5,10-Methenyltetrahydrofolate + NADPH
5,10-methylenetetrahydrofolate:NADP+ oxidoreductase
Swm_00584 K01491 folD R01655
5,10-Methenyltetrahydrofolate + H2O <=> 10-Formyltetrahydrofolate + H+
5,10-methenyltetrahydrofolate 5-hydrolase (decyclizing)
Terpenoid backbone biosynthesisMetabolism; Metabolism of terpenoids and polyketides1 genes · 3 rxns
Swm_00587 K13789 GGPS R01658
Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate
dimethylallyl-diphosphate:isopentenyl-diphosphate dimethylallyltranstransferase
Swm_00587 K13789 GGPS R02003
Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate
geranyl-diphosphate:isopentenyl-diphosphate geranyltrans-transferase
Swm_00587 K13789 GGPS R02061
trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate
trans,trans-farnesyl-diphosphate:isopentenyl-diphosphate farnesyltranstransferase

Overview / global maps (every metabolic gene maps here)

Metabolic pathways 2 genes
Swm_00584 Swm_00587
Microbial metabolism in diverse environments 1 genes
Swm_00584
Carbon metabolism 1 genes
Swm_00584
Biosynthesis of secondary metabolites 1 genes
Swm_00587
Map 01130 1 genes
Swm_00587

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Swm_00584 bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase K01491 folD 1.5.1.5,3.5.4.9 R01220,R01655
Swm_00585 exodeoxyribonuclease VII large subunit K03601 xseA 3.1.11.6 —
Swm_00586 exodeoxyribonuclease VII small subunit K03602 xseB 3.1.11.6 —
Swm_00587 polyprenyl synthetase family protein K13789 GGPS 2.5.1.1,2.5.1.10,2.5.1.29 R01658,R02003,R02061
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