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◀ domain architecture  ·  operons  ·  ❔ guide

Operon NZ_CM161534.1:718,465–724,516

Syntrophomonas wolfei methylbutyratica 4J5 · 6 genes
6
genes
4
KO-annotated
6
reactions
4
pathways

Activity by pathway — click to expand; ranked by genes involved

Oxidative phosphorylationMetabolism; Energy metabolism1 genes · 0 rxns
Swm_00633 K15986 ppaC
Pyrimidine metabolismMetabolism; Nucleotide metabolism1 genes · 6 rxns
Swm_00638 K00756 pdp R01570
Thymidine + Orthophosphate <=> Thymine + 2-Deoxy-D-ribose 1-phosphate
thymidine:phosphate deoxy-alpha-D-ribosyltransferase
Swm_00638 K00756 pdp R01876
Uridine + Orthophosphate <=> Uracil + alpha-D-Ribose 1-phosphate
uridine:phosphate alpha-D-ribosyltransferase
Swm_00638 K00756 pdp R02296
Cytidine + Orthophosphate <=> Cytosine + alpha-D-Ribose 1-phosphate
cytidine:orthophosphate alpha-D-ribosyltransferase
Swm_00638 K00756 pdp R02484
Deoxyuridine + Orthophosphate <=> Uracil + 2-Deoxy-D-ribose 1-phosphate
deoxyuridine:orthophosphate 2-deoxy-D-ribosyltransferase; deoxyuridine:orthophosphate ribosyltransferase
Swm_00638 K00756 pdp R08222
5'-Deoxy-5-fluorouridine + Orthophosphate <=> 5-FU + 5-Deoxyribose-1-phosphate
5'-deoxy-5-fluorouridine:phosphate deoxy-alpha-D-ribosyltransferase
Swm_00638 K00756 pdp R08230
5-FU + 2-Deoxy-D-ribose 1-phosphate <=> 5-Fluorodeoxyuridine + Orthophosphate
5-fluorodeoxyuridine:phosphate deoxy-alpha-D-ribosyltransferase
Drug metabolism - other enzymesMetabolism; Xenobiotics biodegradation and metabolism1 genes · 6 rxns
Swm_00638 K00756 pdp R01570
Thymidine + Orthophosphate <=> Thymine + 2-Deoxy-D-ribose 1-phosphate
thymidine:phosphate deoxy-alpha-D-ribosyltransferase
Swm_00638 K00756 pdp R01876
Uridine + Orthophosphate <=> Uracil + alpha-D-Ribose 1-phosphate
uridine:phosphate alpha-D-ribosyltransferase
Swm_00638 K00756 pdp R02296
Cytidine + Orthophosphate <=> Cytosine + alpha-D-Ribose 1-phosphate
cytidine:orthophosphate alpha-D-ribosyltransferase
Swm_00638 K00756 pdp R02484
Deoxyuridine + Orthophosphate <=> Uracil + 2-Deoxy-D-ribose 1-phosphate
deoxyuridine:orthophosphate 2-deoxy-D-ribosyltransferase; deoxyuridine:orthophosphate ribosyltransferase
Swm_00638 K00756 pdp R08222
5'-Deoxy-5-fluorouridine + Orthophosphate <=> 5-FU + 5-Deoxyribose-1-phosphate
5'-deoxy-5-fluorouridine:phosphate deoxy-alpha-D-ribosyltransferase
Swm_00638 K00756 pdp R08230
5-FU + 2-Deoxy-D-ribose 1-phosphate <=> 5-Fluorodeoxyuridine + Orthophosphate
5-fluorodeoxyuridine:phosphate deoxy-alpha-D-ribosyltransferase
Bladder cancerHuman Diseases; Cancer: specific types1 genes · 6 rxns
Swm_00638 K00756 pdp R01570
Thymidine + Orthophosphate <=> Thymine + 2-Deoxy-D-ribose 1-phosphate
thymidine:phosphate deoxy-alpha-D-ribosyltransferase
Swm_00638 K00756 pdp R01876
Uridine + Orthophosphate <=> Uracil + alpha-D-Ribose 1-phosphate
uridine:phosphate alpha-D-ribosyltransferase
Swm_00638 K00756 pdp R02296
Cytidine + Orthophosphate <=> Cytosine + alpha-D-Ribose 1-phosphate
cytidine:orthophosphate alpha-D-ribosyltransferase
Swm_00638 K00756 pdp R02484
Deoxyuridine + Orthophosphate <=> Uracil + 2-Deoxy-D-ribose 1-phosphate
deoxyuridine:orthophosphate 2-deoxy-D-ribosyltransferase; deoxyuridine:orthophosphate ribosyltransferase
Swm_00638 K00756 pdp R08222
5'-Deoxy-5-fluorouridine + Orthophosphate <=> 5-FU + 5-Deoxyribose-1-phosphate
5'-deoxy-5-fluorouridine:phosphate deoxy-alpha-D-ribosyltransferase
Swm_00638 K00756 pdp R08230
5-FU + 2-Deoxy-D-ribose 1-phosphate <=> 5-Fluorodeoxyuridine + Orthophosphate
5-fluorodeoxyuridine:phosphate deoxy-alpha-D-ribosyltransferase

Overview / global maps (every metabolic gene maps here)

Metabolic pathways 1 genes
Swm_00638

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Swm_00633 putative manganese-dependent inorganic diphosphatase K15986 ppaC 3.6.1.1 —
Swm_00634 stage II sporulation protein M K06384 spoIIM — —
Swm_00635 hypothetical protein — — —
Swm_00636 site-specific tyrosine recombinase XerD K04763 xerD — —
Swm_00637 phosphopentomutase — — —
Swm_00638 pyrimidine-nucleoside phosphorylase K00756 pdp; K00758 deoA, TYMP 2.4.2.2,2.4.2.4 R01570,R01876,R02296,R02484,R08222,R08230
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