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◀ domain architecture  ·  operons  ·  ❔ guide

Operon NZ_CM161534.1:763,064–768,185

Syntrophomonas wolfei methylbutyratica 4J5 · 5 genes
5
genes
3
KO-annotated
3
reactions
2
pathways

Activity by pathway — click to expand; ranked by genes involved

Glycine, serine and threonine metabolismMetabolism; Amino acid metabolism1 genes · 3 rxns
Swm_00678 K06001 trpB R00674
L-Serine + Indole <=> L-Tryptophan + H2O
L-serine hydro-lyase (adding indole; L-tryptophan-forming)
Swm_00678 K06001 trpB R02340
Indoleglycerol phosphate <=> Indole + D-Glyceraldehyde 3-phosphate
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate D-glyceraldehyde-3-phosphate-lyase
Swm_00678 K06001 trpB R02722
L-Serine + Indoleglycerol phosphate <=> L-Tryptophan + D-Glyceraldehyde 3-phosphate + H2O
L-serine hydro-lyase [adding 1-C-(indol-3-yl)glycerol 3-phosphate; L-tryptophan and glyceraldehyde-3-phosphate-forming]
Phenylalanine, tyrosine and tryptophan biosynthesisMetabolism; Amino acid metabolism1 genes · 3 rxns
Swm_00678 K06001 trpB R00674
L-Serine + Indole <=> L-Tryptophan + H2O
L-serine hydro-lyase (adding indole; L-tryptophan-forming)
Swm_00678 K06001 trpB R02340
Indoleglycerol phosphate <=> Indole + D-Glyceraldehyde 3-phosphate
(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate D-glyceraldehyde-3-phosphate-lyase
Swm_00678 K06001 trpB R02722
L-Serine + Indoleglycerol phosphate <=> L-Tryptophan + D-Glyceraldehyde 3-phosphate + H2O
L-serine hydro-lyase [adding 1-C-(indol-3-yl)glycerol 3-phosphate; L-tryptophan and glyceraldehyde-3-phosphate-forming]

Overview / global maps (every metabolic gene maps here)

Metabolic pathways 1 genes
Swm_00678
Biosynthesis of secondary metabolites 1 genes
Swm_00678
Map 01130 1 genes
Swm_00678
Biosynthesis of amino acids 1 genes
Swm_00678

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Swm_00678 TrpB-like pyridoxal phosphate-dependent enzyme K06001 trpB 4.2.1.20 R00674,R02340,R02722
Swm_00679 tRNA (adenine(22)-N(1))-methyltransferase K06967 trmK 2.1.1.217 —
Swm_00680 Nif3-like dinuclear metal center hexameric protein — — —
Swm_00681 HD-GYP domain-containing protein — — —
Swm_00682 HU family DNA-binding protein K03530 hupB — —
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