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◀ domain architecture  ·  operons  ·  ❔ guide

Operon NZ_CM128632.1:5,988–11,570

Syntrophomonas erecta DSM 16215 · 5 genes
5
genes
3
KO-annotated
7
reactions
7
pathways

Activity by pathway — click to expand; ranked by genes involved

Sulfur metabolismMetabolism; Energy metabolism2 genes · 2 rxns
Ser_00008 K21309 soeC R11487
Sulfite + Quinone + H2O <=> Sulfate + Hydroquinone
sulfite:quinone oxidoreductase
Ser_00010 K07306 dmsA R09501
Dimethyl sulfide + Menaquinone + H2O <=> Dimethyl sulfoxide + Menaquinol
dimethyl sulfide:menaquinone oxidoreductase
Glycolysis / GluconeogenesisMetabolism; Carbohydrate metabolism1 genes · 5 rxns
Ser_00011 K00176 korD, oorD R01196
2 Reduced ferredoxin + Acetyl-CoA + CO2 + 2 H+ <=> 2 Oxidized ferredoxin + Pyruvate + CoA
pyruvate:ferredoxin 2-oxidoreductase (CoA-acetylating)
Ser_00011 K00176 korD, oorD R01197
2 Reduced ferredoxin + Succinyl-CoA + CO2 + 2 H+ <=> 2 Oxidized ferredoxin + 2-Oxoglutarate + CoA
2-oxoglutarate:ferredoxin oxidoreductase (decarboxylating)
Ser_00011 K00176 korD, oorD R03164
6-Hydroxynicotinate + Reduced ferredoxin <=> 6-Oxo-1,4,5,6-tetrahydronicotinate + Oxidized ferredoxin
1,4,5,6-tetrahydro-6-oxonicotinate:ferredoxin oxidoreductase
Ser_00011 K00176 korD, oorD R10159
2 Reduced adrenal ferredoxin + NADP+ + H+ <=> 2 Oxidized adrenal ferredoxin + NADPH
adrenodoxin:NADP+ oxidoreductase
Ser_00011 K00176 korD, oorD R10866
Pyruvate + CoA + Oxidized flavodoxin <=> Acetyl-CoA + CO2 + Reduced flavodoxin
pyruvate:flavodoxin 2-oxidoreductase (CoA-acetylating)
Citrate cycle (TCA cycle)Metabolism; Carbohydrate metabolism1 genes · 5 rxns
Ser_00011 K00176 korD, oorD R01196
2 Reduced ferredoxin + Acetyl-CoA + CO2 + 2 H+ <=> 2 Oxidized ferredoxin + Pyruvate + CoA
pyruvate:ferredoxin 2-oxidoreductase (CoA-acetylating)
Ser_00011 K00176 korD, oorD R01197
2 Reduced ferredoxin + Succinyl-CoA + CO2 + 2 H+ <=> 2 Oxidized ferredoxin + 2-Oxoglutarate + CoA
2-oxoglutarate:ferredoxin oxidoreductase (decarboxylating)
Ser_00011 K00176 korD, oorD R03164
6-Hydroxynicotinate + Reduced ferredoxin <=> 6-Oxo-1,4,5,6-tetrahydronicotinate + Oxidized ferredoxin
1,4,5,6-tetrahydro-6-oxonicotinate:ferredoxin oxidoreductase
Ser_00011 K00176 korD, oorD R10159
2 Reduced adrenal ferredoxin + NADP+ + H+ <=> 2 Oxidized adrenal ferredoxin + NADPH
adrenodoxin:NADP+ oxidoreductase
Ser_00011 K00176 korD, oorD R10866
Pyruvate + CoA + Oxidized flavodoxin <=> Acetyl-CoA + CO2 + Reduced flavodoxin
pyruvate:flavodoxin 2-oxidoreductase (CoA-acetylating)
Pyruvate metabolismMetabolism; Carbohydrate metabolism1 genes · 5 rxns
Ser_00011 K00176 korD, oorD R01196
2 Reduced ferredoxin + Acetyl-CoA + CO2 + 2 H+ <=> 2 Oxidized ferredoxin + Pyruvate + CoA
pyruvate:ferredoxin 2-oxidoreductase (CoA-acetylating)
Ser_00011 K00176 korD, oorD R01197
2 Reduced ferredoxin + Succinyl-CoA + CO2 + 2 H+ <=> 2 Oxidized ferredoxin + 2-Oxoglutarate + CoA
2-oxoglutarate:ferredoxin oxidoreductase (decarboxylating)
Ser_00011 K00176 korD, oorD R03164
6-Hydroxynicotinate + Reduced ferredoxin <=> 6-Oxo-1,4,5,6-tetrahydronicotinate + Oxidized ferredoxin
1,4,5,6-tetrahydro-6-oxonicotinate:ferredoxin oxidoreductase
Ser_00011 K00176 korD, oorD R10159
2 Reduced adrenal ferredoxin + NADP+ + H+ <=> 2 Oxidized adrenal ferredoxin + NADPH
adrenodoxin:NADP+ oxidoreductase
Ser_00011 K00176 korD, oorD R10866
Pyruvate + CoA + Oxidized flavodoxin <=> Acetyl-CoA + CO2 + Reduced flavodoxin
pyruvate:flavodoxin 2-oxidoreductase (CoA-acetylating)
Butanoate metabolismMetabolism; Carbohydrate metabolism1 genes · 5 rxns
Ser_00011 K00176 korD, oorD R01196
2 Reduced ferredoxin + Acetyl-CoA + CO2 + 2 H+ <=> 2 Oxidized ferredoxin + Pyruvate + CoA
pyruvate:ferredoxin 2-oxidoreductase (CoA-acetylating)
Ser_00011 K00176 korD, oorD R01197
2 Reduced ferredoxin + Succinyl-CoA + CO2 + 2 H+ <=> 2 Oxidized ferredoxin + 2-Oxoglutarate + CoA
2-oxoglutarate:ferredoxin oxidoreductase (decarboxylating)
Ser_00011 K00176 korD, oorD R03164
6-Hydroxynicotinate + Reduced ferredoxin <=> 6-Oxo-1,4,5,6-tetrahydronicotinate + Oxidized ferredoxin
1,4,5,6-tetrahydro-6-oxonicotinate:ferredoxin oxidoreductase
Ser_00011 K00176 korD, oorD R10159
2 Reduced adrenal ferredoxin + NADP+ + H+ <=> 2 Oxidized adrenal ferredoxin + NADPH
adrenodoxin:NADP+ oxidoreductase
Ser_00011 K00176 korD, oorD R10866
Pyruvate + CoA + Oxidized flavodoxin <=> Acetyl-CoA + CO2 + Reduced flavodoxin
pyruvate:flavodoxin 2-oxidoreductase (CoA-acetylating)
Other carbon fixation pathwaysMetabolism; Energy metabolism1 genes · 5 rxns
Ser_00011 K00176 korD, oorD R01196
2 Reduced ferredoxin + Acetyl-CoA + CO2 + 2 H+ <=> 2 Oxidized ferredoxin + Pyruvate + CoA
pyruvate:ferredoxin 2-oxidoreductase (CoA-acetylating)
Ser_00011 K00176 korD, oorD R01197
2 Reduced ferredoxin + Succinyl-CoA + CO2 + 2 H+ <=> 2 Oxidized ferredoxin + 2-Oxoglutarate + CoA
2-oxoglutarate:ferredoxin oxidoreductase (decarboxylating)
Ser_00011 K00176 korD, oorD R03164
6-Hydroxynicotinate + Reduced ferredoxin <=> 6-Oxo-1,4,5,6-tetrahydronicotinate + Oxidized ferredoxin
1,4,5,6-tetrahydro-6-oxonicotinate:ferredoxin oxidoreductase
Ser_00011 K00176 korD, oorD R10159
2 Reduced adrenal ferredoxin + NADP+ + H+ <=> 2 Oxidized adrenal ferredoxin + NADPH
adrenodoxin:NADP+ oxidoreductase
Ser_00011 K00176 korD, oorD R10866
Pyruvate + CoA + Oxidized flavodoxin <=> Acetyl-CoA + CO2 + Reduced flavodoxin
pyruvate:flavodoxin 2-oxidoreductase (CoA-acetylating)
Nicotinate and nicotinamide metabolismMetabolism; Metabolism of cofactors and vitamins1 genes · 5 rxns
Ser_00011 K00176 korD, oorD R01196
2 Reduced ferredoxin + Acetyl-CoA + CO2 + 2 H+ <=> 2 Oxidized ferredoxin + Pyruvate + CoA
pyruvate:ferredoxin 2-oxidoreductase (CoA-acetylating)
Ser_00011 K00176 korD, oorD R01197
2 Reduced ferredoxin + Succinyl-CoA + CO2 + 2 H+ <=> 2 Oxidized ferredoxin + 2-Oxoglutarate + CoA
2-oxoglutarate:ferredoxin oxidoreductase (decarboxylating)
Ser_00011 K00176 korD, oorD R03164
6-Hydroxynicotinate + Reduced ferredoxin <=> 6-Oxo-1,4,5,6-tetrahydronicotinate + Oxidized ferredoxin
1,4,5,6-tetrahydro-6-oxonicotinate:ferredoxin oxidoreductase
Ser_00011 K00176 korD, oorD R10159
2 Reduced adrenal ferredoxin + NADP+ + H+ <=> 2 Oxidized adrenal ferredoxin + NADPH
adrenodoxin:NADP+ oxidoreductase
Ser_00011 K00176 korD, oorD R10866
Pyruvate + CoA + Oxidized flavodoxin <=> Acetyl-CoA + CO2 + Reduced flavodoxin
pyruvate:flavodoxin 2-oxidoreductase (CoA-acetylating)

Overview / global maps (every metabolic gene maps here)

Metabolic pathways 2 genes
Ser_00008 Ser_00011
Microbial metabolism in diverse environments 2 genes
Ser_00008 Ser_00011
Map 01130 1 genes
Ser_00011
Carbon metabolism 1 genes
Ser_00011

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Ser_00007 TorD/DmsD family molecular chaperone — — —
Ser_00008 hypothetical protein K21309 soeC — R11487
Ser_00009 4Fe-4S dicluster domain-containing protein — — —
Ser_00010 molybdopterin-dependent oxidoreductase K07306 dmsA 1.8.5.3 R09501
Ser_00011 4Fe-4S binding protein K00176 korD, oorD; K00528 fpr; K03737 por, nifJ; K20449 hnr 1.18.1.2,1.19.1.1,1.2.7.1,1.2.7.3,1.3.7.1 R01196,R01197,R03164,R10159,R10866
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