Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide

Operon NZ_CM128632.1:638,702–641,851

Syntrophomonas erecta DSM 16215 · 3 genes
3
genes
3
KO-annotated
3
reactions
4
pathways

Activity by pathway — click to expand; ranked by genes involved

Monobactam biosynthesisMetabolism; Biosynthesis of other secondary metabolites3 genes · 3 rxns
Ser_00562 K00133 asd R02291
L-Aspartate 4-semialdehyde + Orthophosphate + NADP+ <=> 4-Phospho-L-aspartate + NADPH + H+
L-aspartate-4-semialdehyde:NADP+ oxidoreductase (phosphorylating)
Ser_00563 K00928 lysC R00480
ATP + L-Aspartate <=> ADP + 4-Phospho-L-aspartate
ATP:L-aspartate 4-phosphotransferase
Ser_00564 K01714 dapA R10147
L-Aspartate 4-semialdehyde + Pyruvate <=> (2S,4S)-4-Hydroxy-2,3,4,5-tetrahydrodipicolinate + H2O
L-aspartate-4-semialdehyde hydro-lyase [adding pyruvate and cyclizing; (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate-forming]
Lysine biosynthesisMetabolism; Amino acid metabolism3 genes · 3 rxns
Ser_00562 K00133 asd R02291
L-Aspartate 4-semialdehyde + Orthophosphate + NADP+ <=> 4-Phospho-L-aspartate + NADPH + H+
L-aspartate-4-semialdehyde:NADP+ oxidoreductase (phosphorylating)
Ser_00563 K00928 lysC R00480
ATP + L-Aspartate <=> ADP + 4-Phospho-L-aspartate
ATP:L-aspartate 4-phosphotransferase
Ser_00564 K01714 dapA R10147
L-Aspartate 4-semialdehyde + Pyruvate <=> (2S,4S)-4-Hydroxy-2,3,4,5-tetrahydrodipicolinate + H2O
L-aspartate-4-semialdehyde hydro-lyase [adding pyruvate and cyclizing; (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate-forming]
Glycine, serine and threonine metabolismMetabolism; Amino acid metabolism2 genes · 2 rxns
Ser_00562 K00133 asd R02291
L-Aspartate 4-semialdehyde + Orthophosphate + NADP+ <=> 4-Phospho-L-aspartate + NADPH + H+
L-aspartate-4-semialdehyde:NADP+ oxidoreductase (phosphorylating)
Ser_00563 K00928 lysC R00480
ATP + L-Aspartate <=> ADP + 4-Phospho-L-aspartate
ATP:L-aspartate 4-phosphotransferase
Cysteine and methionine metabolismMetabolism; Amino acid metabolism2 genes · 2 rxns
Ser_00562 K00133 asd R02291
L-Aspartate 4-semialdehyde + Orthophosphate + NADP+ <=> 4-Phospho-L-aspartate + NADPH + H+
L-aspartate-4-semialdehyde:NADP+ oxidoreductase (phosphorylating)
Ser_00563 K00928 lysC R00480
ATP + L-Aspartate <=> ADP + 4-Phospho-L-aspartate
ATP:L-aspartate 4-phosphotransferase

Overview / global maps (every metabolic gene maps here)

Metabolic pathways 3 genes
Ser_00562 Ser_00563 Ser_00564
Biosynthesis of secondary metabolites 3 genes
Ser_00562 Ser_00563 Ser_00564
Microbial metabolism in diverse environments 3 genes
Ser_00562 Ser_00563 Ser_00564
Map 01130 3 genes
Ser_00562 Ser_00563 Ser_00564
Biosynthesis of amino acids 3 genes
Ser_00562 Ser_00563 Ser_00564
2-Oxocarboxylic acid metabolism 2 genes
Ser_00562 Ser_00563

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Ser_00562 aspartate-semialdehyde dehydrogenase K00133 asd 1.2.1.11 R02291
Ser_00563 aspartate kinase K00928 lysC 2.7.2.4 R00480
Ser_00564 4-hydroxy-tetrahydrodipicolinate synthase K01714 dapA 4.3.3.7 R10147
↑ Top




v1.00 @copyright 2026 UCLA