Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide

Operon NZ_CM128632.1:674,167–678,584

Syntrophomonas erecta DSM 16215 · 6 genes
6
genes
4
KO-annotated
10
reactions
5
pathways

Activity by pathway — click to expand; ranked by genes involved

Purine metabolismMetabolism; Nucleotide metabolism2 genes · 6 rxns
Ser_00594 K00942 gmk, GUK1 R00332
ATP + GMP <=> ADP + GDP
ATP:GMP phosphotransferase
Ser_00594 K00942 gmk, GUK1 R02090
ATP + dGMP <=> ADP + dGDP
ATP:dGMP phosphotransferase
Ser_00595 K03060 rpoZ R00435
ATP + RNA <=> Diphosphate + RNA
ATP:polynucleotide adenylyltransferase; ATP:RNA adenylyltransferase
Ser_00595 K03060 rpoZ R00441
GTP + RNA <=> Diphosphate + RNA
GTP:RNA guanylyltransferase (DNA-directed); GTP:RNA guanylyltransferase (RNA-directed)
Ser_00595 K03060 rpoZ R00442
CTP + RNA <=> Diphosphate + RNA
CTP:RNA cytidylyltransferase (DNA-directed); CTP:RNA cytidylyltransferase (RNA-directed)
Ser_00595 K03060 rpoZ R00443
UTP + RNA <=> Diphosphate + RNA
UTP:RNA uridylyltransferase
Pyrimidine metabolismMetabolism; Nucleotide metabolism1 genes · 4 rxns
Ser_00595 K03060 rpoZ R00435
ATP + RNA <=> Diphosphate + RNA
ATP:polynucleotide adenylyltransferase; ATP:RNA adenylyltransferase
Ser_00595 K03060 rpoZ R00441
GTP + RNA <=> Diphosphate + RNA
GTP:RNA guanylyltransferase (DNA-directed); GTP:RNA guanylyltransferase (RNA-directed)
Ser_00595 K03060 rpoZ R00442
CTP + RNA <=> Diphosphate + RNA
CTP:RNA cytidylyltransferase (DNA-directed); CTP:RNA cytidylyltransferase (RNA-directed)
Ser_00595 K03060 rpoZ R00443
UTP + RNA <=> Diphosphate + RNA
UTP:RNA uridylyltransferase
RNA polymeraseGenetic Information Processing; Transcription1 genes · 4 rxns
Ser_00595 K03060 rpoZ R00435
ATP + RNA <=> Diphosphate + RNA
ATP:polynucleotide adenylyltransferase; ATP:RNA adenylyltransferase
Ser_00595 K03060 rpoZ R00441
GTP + RNA <=> Diphosphate + RNA
GTP:RNA guanylyltransferase (DNA-directed); GTP:RNA guanylyltransferase (RNA-directed)
Ser_00595 K03060 rpoZ R00442
CTP + RNA <=> Diphosphate + RNA
CTP:RNA cytidylyltransferase (DNA-directed); CTP:RNA cytidylyltransferase (RNA-directed)
Ser_00595 K03060 rpoZ R00443
UTP + RNA <=> Diphosphate + RNA
UTP:RNA uridylyltransferase
Pantothenate and CoA biosynthesisMetabolism; Metabolism of cofactors and vitamins1 genes · 2 rxns
Ser_00596 K01598 PPCDC, coaC R03269
(R)-4'-Phosphopantothenoyl-L-cysteine <=> Pantetheine 4'-phosphate + CO2
N-[(R)-4'-phosphopantothenoyl]-L-cysteine carboxy-lyase
Ser_00596 K01598 PPCDC, coaC R04231
CTP + D-4'-Phosphopantothenate + L-Cysteine <=> CMP + Diphosphate + (R)-4'-Phosphopantothenoyl-L-cysteine
(R)-4'-phosphopantothenate:L-cysteine ligase
Cysteine and methionine metabolismMetabolism; Amino acid metabolism1 genes · 2 rxns
Ser_00597 K00789 metK, MAT R00177
Orthophosphate + Diphosphate + S-Adenosyl-L-methionine <=> ATP + L-Methionine + H2O
ATP:L-methionine S-adenosyltransferase
Ser_00597 K00789 metK, MAT R04771
ATP + L-Selenomethionine + H2O <=> Orthophosphate + Diphosphate + Se-Adenosylselenomethionine
ATP:L-selenomethione S-adenosyltransferase

Overview / global maps (every metabolic gene maps here)

Metabolic pathways 4 genes
Ser_00594 Ser_00595 Ser_00596 Ser_00597
Biosynthesis of secondary metabolites 1 genes
Ser_00597
Biosynthesis of amino acids 1 genes
Ser_00597

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Ser_00592 YicC/YloC family endoribonuclease — — —
Ser_00593 extracellular matrix/biofilm regulator RemA — — —
Ser_00594 guanylate kinase K00942 gmk, GUK1 2.7.4.8 R00332,R02090
Ser_00595 DNA-directed RNA polymerase subunit omega K03060 rpoZ 2.7.7.6 R00435,R00441,R00442,R00443
Ser_00596 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC K01598 PPCDC, coaC; K13038 coaBC, dfp 4.1.1.36,6.3.2.5 R03269,R04231
Ser_00597 methionine adenosyltransferase K00789 metK, MAT 2.5.1.6 R00177,R04771
↑ Top




v1.00 @copyright 2026 UCLA