Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide
enter a locus id, or use ?gbid= / ?gene_oid=

Spalm_01403

smpp Syntrophomonas palmitatica JCM14374 Spalm
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
✕

Identity & position

Product
NRDE family protein
Gene
—
Location
NZ_BBCE01000010.1:73,583–74,392 (−)   269 aa
Keys
gbid 1776877   gene_oid 2731399938  

Domain architecture

Pfam domain
Pfam signature: pfam05742

Putative operon (same contig + strand, gap ≤ 300 bp)

Monocistronic at this threshold — no co-oriented neighbour within 300 bp. try gap = 300 bp

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

5 proteins across 5 genomes share architecture group #1214  pfam05742

GenomeLocusaaSP/TMPfam order
Syntrophomonas palmitatica JCM14374 Spalm Spalm_01403 ◀ 269 pfam05742
Syntrophomonas curvata DSM15682 / GL#14 Scur_02631 254 pfam05742
Syntrophomonas wolfei methylbutyratica 4J5 Swm_02670 254 pfam05742
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_02287 254 pfam05742
Syntrophomonas zehnderi OL-4 Szehn Szeh_02472 252 pfam05742
↑ Top




v1.00 @copyright 2026 UCLA