Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide
enter a locus id, or use ?gbid= / ?gene_oid=

Ser_00102

smpp Syntrophomonas erecta DSM 16215
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
✕

Identity & position

Product
VanW family protein
Gene
—
Location
NZ_CM128632.1:121,463–122,479 (−)   338 aa
Keys
gbid 945441   gene_oid 8030286655   SignalP

Domain architecture

Pfam domain ▏signal peptide
Pfam signature: pfam07833,pfam04294

Putative operon (same contig + strand, gap ≤ 300 bp)

Monocistronic at this threshold — no co-oriented neighbour within 300 bp. try gap = 300 bp

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

3 proteins across 3 genomes share architecture group #2226  pfam04294,pfam07833

GenomeLocusaaSP/TMPfam order
Syntrophomonas erecta DSM 16215 / GB-438 Ser_00102 ◀ 338 SP pfam07833,pfam04294
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_00668 338 SP pfam07833,pfam04294
Syntrophomonas zehnderi OL-4 Szehn Szeh_00854 358 SP pfam07833,pfam04294
↑ Top




v1.00 @copyright 2026 UCLA