Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide
enter a locus id, or use ?gbid= / ?gene_oid=

Sws_02858

smpp Syntrophomonas wolfei saponavida
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
✕

Identity & position

Product
B12-binding domain-containing radical SAM protein
Gene
—
Location
NZ_CM161535.1:3,078,993–3,080,720 (+)   575 aa
Keys
gbid 1720557   gene_oid 8099424882  

Domain architecture

Pfam domain
Pfam signature: pfam02310,pfam04055,pfam13311

Putative operon (same contig + strand, gap ≤ 50 bp)

Monocistronic at this threshold — no co-oriented neighbour within 50 bp. try gap = 300 bp

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

8 proteins across 8 genomes share architecture group #631  pfam02310,pfam04055,pfam13311

GenomeLocusaaSP/TMPfam order
Syntrophomonas wolfei saponavida / SD2 Sws_02858 ◀ 575 pfam02310,pfam04055,pfam13311
Syntrophomonas curvata DSM15682 / GL#14 Scur_01535 585 pfam02310,pfam04055,pfam13311
Syntrophomonas erecta DSM 16215 / GB-438 Ser_00703 578 pfam02310,pfam04055,pfam13311
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_00075 578 pfam02310,pfam04055,pfam13311
Syntrophomonas palmitatica JCM14374 Spalm Spalm_01825 573 pfam02310,pfam04055,pfam13311
Syntrophomonas wolfei methylbutyratica 4J5 Swm_01119 585 SP pfam02310,pfam04055,pfam13311
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_01018 584 pfam02310,pfam04055,pfam13311
Syntrophomonas zehnderi OL-4 Szehn Szeh_01185 576 pfam02310,pfam04055,pfam13311
↑ Top




v1.00 @copyright 2026 UCLA