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◀ domain architecture  ·  operons  ·  ❔ guide
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Spalm_01156

smpp Syntrophomonas palmitatica JCM14374 Spalm
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
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Identity & position

Product
4-hydroxy-tetrahydrodipicolinate reductase
Gene
dapB
Location
NZ_BBCE01000008.1:65,584–66,384 (−)   266 aa
Keys
gbid 1776723   gene_oid 2731399662  

Domain architecture

Pfam domain
Pfam signature: pfam01113,pfam05173

Putative operon (same contig + strand, gap ≤ 50 bp)

Monocistronic at this threshold — no co-oriented neighbour within 50 bp. try gap = 300 bp

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

8 proteins across 8 genomes share architecture group #777  pfam01113,pfam05173

GenomeLocusaaSP/TMPfam order
Syntrophomonas palmitatica JCM14374 Spalm Spalm_01156 ◀ 266 pfam01113,pfam05173
Syntrophomonas curvata DSM15682 / GL#14 Scur_01652 266 pfam01113,pfam05173
Syntrophomonas erecta DSM 16215 / GB-438 Ser_00559 266 pfam01113,pfam05173
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_00210 266 pfam01113,pfam05173
Syntrophomonas wolfei saponavida / SD2 Sws_02531 265 pfam01113,pfam05173
Syntrophomonas wolfei methylbutyratica 4J5 Swm_01428 266 pfam01113,pfam05173
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_01285 266 pfam01113,pfam05173
Syntrophomonas zehnderi OL-4 Szehn Szeh_01737 266 pfam01113,pfam05173
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