Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide
enter a locus id, or use ?gbid= / ?gene_oid=

Spalm_01167

smpp Syntrophomonas palmitatica JCM14374 Spalm
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
✕

Identity & position

Product
signal peptidase II
Gene
lspA
Location
NZ_BBCE01000008.1:76,893–77,357 (−)   154 aa
Keys
gbid 1776938   gene_oid 2731399675   TM×3

Domain architecture

Pfam domain ▮ TM helix
Pfam signature: pfam01252

Putative operon (same contig + strand, gap ≤ 50 bp)

Monocistronic at this threshold — no co-oriented neighbour within 50 bp. try gap = 300 bp

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

8 proteins across 8 genomes share architecture group #786  pfam01252

GenomeLocusaaSP/TMPfam order
Syntrophomonas palmitatica JCM14374 Spalm Spalm_01167 ◀ 154 TM pfam01252
Syntrophomonas curvata DSM15682 / GL#14 Scur_01666 150 pfam01252
Syntrophomonas erecta DSM 16215 / GB-438 Ser_00545 145 TM pfam01252
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_00224 145 TM pfam01252
Syntrophomonas wolfei saponavida / SD2 Sws_02515 150 TM pfam01252
Syntrophomonas wolfei methylbutyratica 4J5 Swm_01442 149 TM pfam01252
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_01299 149 TM pfam01252
Syntrophomonas zehnderi OL-4 Szehn Szeh_01721 147 TM pfam01252
↑ Top




v1.00 @copyright 2026 UCLA