◀ domain architecture  ·  operons  ·  ❔ guide

Szeh_01123

smpp Syntrophomonas zehnderi OL-4 Szehn
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶

Identity & position

Product
efflux RND transporter permease subunit
Gene
Location
NZ_CGIH01000020.1:42,976–45,990 (−)   1004 aa
Keys
gbid 1784493   gene_oid 2677389002   TM×12

Domain architecture

Pfam domain ▮ TM helix
Pfam signature: pfam00873

Putative operon (same contig + strand, gap ≤ 50 bp)

Monocistronic at this threshold — no co-oriented neighbour within 50 bp. try gap = 300 bp

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

16 proteins across 8 genomes share architecture group #123  pfam00873

GenomeLocusaaSP/TMPfam order
Syntrophomonas zehnderi OL-4 Szehn Szeh_00498 1047 TM pfam00873
Syntrophomonas zehnderi OL-4 Szehn Szeh_01123 1004 TM pfam00873
Syntrophomonas curvata DSM15682 / GL#14 Scur_00240 1045 pfam00873
Syntrophomonas erecta DSM 16215 / GB-438 Ser_00932 1046 TM pfam00873
Syntrophomonas erecta DSM 16215 / GB-438 Ser_02010 1044 TM pfam00873
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_01252 1044 TM pfam00873
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_02408 1046 TM pfam00873
Syntrophomonas palmitatica JCM14374 Spalm Spalm_00770 1046 TM pfam00873
Syntrophomonas wolfei saponavida / SD2 Sws_00824 1038 TM pfam00873
Syntrophomonas wolfei saponavida / SD2 Sws_01296 1041 TM pfam00873
Syntrophomonas wolfei methylbutyratica 4J5 Swm_00158 1034 TM pfam00873
Syntrophomonas wolfei methylbutyratica 4J5 Swm_01258 1009 TM pfam00873
Syntrophomonas wolfei methylbutyratica 4J5 Swm_01999 272 pfam00873
Syntrophomonas wolfei methylbutyratica 4J5 Swm_02351 144 TM pfam00873
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_00172 1034 TM pfam00873
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_01123 1009 TM pfam00873
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