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◀ domain architecture  ·  operons  ·  ❔ guide
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Spalm_00851

smpp Syntrophomonas palmitatica JCM14374 Spalm
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
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Identity & position

Product
ribonuclease R
Gene
rnr
Location
NZ_BBCE01000005.1:119,033–121,213 (+)   726 aa
Keys
gbid 1814336   gene_oid 2731399299  

Domain architecture

Pfam domain
Pfam signature: pfam08206,pfam17876,pfam00773,pfam00575

Putative operon (same contig + strand, gap ≤ 50 bp)

Monocistronic at this threshold — no co-oriented neighbour within 50 bp. try gap = 300 bp

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

6 proteins across 6 genomes share architecture group #198  pfam00575,pfam00773,pfam08206,pfam17876

GenomeLocusaaSP/TMPfam order
Syntrophomonas palmitatica JCM14374 Spalm Spalm_00851 ◀ 726 pfam08206,pfam17876,pfam00773,pfam00575
Syntrophomonas curvata DSM15682 / GL#14 Scur_00332 702 pfam08206,pfam17876,pfam00773,pfam00575
Syntrophomonas wolfei saponavida / SD2 Sws_01353 738 pfam08206,pfam17876,pfam00773,pfam00575
Syntrophomonas wolfei methylbutyratica 4J5 Swm_00253 705 pfam08206,pfam17876,pfam00773,pfam00575
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_00276 705 pfam08206,pfam17876,pfam00773,pfam00575
Syntrophomonas zehnderi OL-4 Szehn Szeh_01704 704 pfam08206,pfam17876,pfam00773,pfam00575
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