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◀ domain architecture  ·  operons  ·  ❔ guide
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Spalm_01203

smpp Syntrophomonas palmitatica JCM14374 Spalm
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
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Identity & position

Product
polyribonucleotide nucleotidyltransferase
Gene
—
Location
NZ_BBCE01000008.1:114,979–117,090 (−)   703 aa
Keys
gbid 1814413   gene_oid 2731399715  

Domain architecture

Pfam domain
Pfam signature: pfam01138,pfam03725,pfam03726,pfam01138,pfam03725,pfam00013,pfam00575

Putative operon (same contig + strand, gap ≤ 50 bp)

Monocistronic at this threshold — no co-oriented neighbour within 50 bp. try gap = 300 bp

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

4 proteins across 4 genomes share architecture group #1971  pfam00013,pfam00575,pfam01138,pfam01138,pfam03725,pfam03725,pfam03726

GenomeLocusaaSP/TMPfam order
Syntrophomonas palmitatica JCM14374 Spalm Spalm_01203 ◀ 703 pfam01138,pfam03725,pfam03726,pfam01138,pfam03725,pfam00013,pfam00575
Syntrophomonas curvata DSM15682 / GL#14 Scur_01266 707 pfam01138,pfam03725,pfam03726,pfam01138,pfam03725,pfam00013,pfam00575
Syntrophomonas wolfei saponavida / SD2 Sws_00087 702 pfam01138,pfam03725,pfam03726,pfam01138,pfam03725,pfam00013,pfam00575
Syntrophomonas zehnderi OL-4 Szehn Szeh_01565 700 pfam01138,pfam03725,pfam03726,pfam01138,pfam03725,pfam00013,pfam00575
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