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◀ domain architecture  ·  operons  ·  ❔ guide
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Swm_00115

smpp Syntrophomonas wolfei methylbutyratica 4J5
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
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Identity & position

Product
lysine--tRNA ligase
Gene
lysS
Location
NZ_CM161534.1:120,753–122,234 (+)   493 aa
Keys
gbid 937292   gene_oid 8108582180  

Domain architecture

Pfam domain
Pfam signature: pfam01336,pfam00152

Putative operon (same contig + strand, gap ≤ 50 bp)

Monocistronic at this threshold — no co-oriented neighbour within 50 bp. try gap = 300 bp

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

11 proteins across 8 genomes share architecture group #85  pfam00152,pfam01336

GenomeLocusaaSP/TMPfam order
Syntrophomonas wolfei methylbutyratica 4J5 Swm_00115 ◀ 493 pfam01336,pfam00152
Syntrophomonas curvata DSM15682 / GL#14 Scur_00198 490 pfam01336,pfam00152
Syntrophomonas curvata DSM15682 / GL#14 Scur_02838 464 pfam01336,pfam00152
Syntrophomonas erecta DSM 16215 / GB-438 Ser_02029 495 pfam01336,pfam00152
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_01233 495 pfam01336,pfam00152
Syntrophomonas palmitatica JCM14374 Spalm Spalm_01247 490 pfam01336,pfam00152
Syntrophomonas wolfei saponavida / SD2 Sws_01257 491 pfam01336,pfam00152
Syntrophomonas wolfei saponavida / SD2 Sws_03210 464 pfam01336,pfam00152
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_00114 493 pfam01336,pfam00152
Syntrophomonas zehnderi OL-4 Szehn Szeh_00161 464 pfam01336,pfam00152
Syntrophomonas zehnderi OL-4 Szehn Szeh_00473 494 pfam01336,pfam00152
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