◀ domain architecture  ·  operons  ·  ❔ guide

Swm_00230

smpp Syntrophomonas wolfei methylbutyratica 4J5
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶

Identity & position

Product
phage holin family protein
Gene
Location
NZ_CM161534.1:270,452–270,811 (+)   119 aa
Keys
gbid 937409   gene_oid 8108582302   TM×4

Domain architecture

Pfam domain ▮ TM helix
Pfam signature: pfam04020

Putative operon (same contig + strand, gap ≤ 50 bp)

Monocistronic at this threshold — no co-oriented neighbour within 50 bp. try gap = 300 bp

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

16 proteins across 8 genomes share architecture group #178  pfam04020

GenomeLocusaaSP/TMPfam order
Syntrophomonas wolfei methylbutyratica 4J5 Swm_00230 119 TM pfam04020
Syntrophomonas wolfei methylbutyratica 4J5 Swm_01612 109 TM pfam04020
Syntrophomonas curvata DSM15682 / GL#14 Scur_00313 118 pfam04020
Syntrophomonas curvata DSM15682 / GL#14 Scur_01949 110 pfam04020
Syntrophomonas erecta DSM 16215 / GB-438 Ser_01462 109 TM pfam04020
Syntrophomonas erecta DSM 16215 / GB-438 Ser_01945 118 TM pfam04020
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_01317 118 TM pfam04020
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_01865 109 TM pfam04020
Syntrophomonas palmitatica JCM14374 Spalm Spalm_00836 118 TM pfam04020
Syntrophomonas palmitatica JCM14374 Spalm Spalm_01593 109 TM pfam04020
Syntrophomonas wolfei saponavida / SD2 Sws_01336 119 TM pfam04020
Syntrophomonas wolfei saponavida / SD2 Sws_02057 113 TM pfam04020
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_00252 119 TM pfam04020
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_01465 109 TM pfam04020
Syntrophomonas zehnderi OL-4 Szehn Szeh_02350 118 TM pfam04020
Syntrophomonas zehnderi OL-4 Szehn Szeh_02441 109 TM pfam04020
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