Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide
enter a locus id, or use ?gbid= / ?gene_oid=

Swm_01065

smpp Syntrophomonas wolfei methylbutyratica 4J5
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
✕

Identity & position

Product
RNA chaperone Hfq
Gene
hfq
Location
NZ_CM161534.1:1,176,321–1,176,569 (+)   82 aa
Keys
gbid 938263   gene_oid 8108583187  

Domain architecture

Pfam domain
Pfam signature: pfam17209

Putative operon (same contig + strand, gap ≤ 50 bp)

Monocistronic at this threshold — no co-oriented neighbour within 50 bp. try gap = 300 bp

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

7 proteins across 7 genomes share architecture group #618  pfam17209

GenomeLocusaaSP/TMPfam order
Syntrophomonas wolfei methylbutyratica 4J5 Swm_01065 ◀ 82 pfam17209
Syntrophomonas curvata DSM15682 / GL#14 Scur_01555 82 pfam17209
Syntrophomonas erecta DSM 16215 / GB-438 Ser_00689 82 pfam17209
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_00089 82 pfam17209
Syntrophomonas wolfei saponavida / SD2 Sws_02843 83 pfam17209
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_00981 82 pfam17209
Syntrophomonas zehnderi OL-4 Szehn Szeh_01202 83 pfam17209
↑ Top




v1.00 @copyright 2026 UCLA