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◀ domain architecture  ·  operons  ·  ❔ guide
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Swm_02624

smpp Syntrophomonas wolfei methylbutyratica 4J5
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
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Identity & position

Product
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Gene
rlmD
Location
NZ_CM161534.1:2,901,377–2,902,636 (−)   419 aa
Keys
gbid 939845   gene_oid 8108584865  

Domain architecture

Pfam domain
Pfam signature: pfam01938,pfam05958

Putative operon (same contig + strand, gap ≤ 50 bp)

Monocistronic at this threshold — no co-oriented neighbour within 50 bp. try gap = 300 bp

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

7 proteins across 7 genomes share architecture group #1207  pfam01938,pfam05958

GenomeLocusaaSP/TMPfam order
Syntrophomonas wolfei methylbutyratica 4J5 Swm_02624 ◀ 419 pfam01938,pfam05958
Syntrophomonas curvata DSM15682 / GL#14 Scur_01408 421 pfam01938,pfam05958
Syntrophomonas erecta DSM 16215 / GB-438 Ser_00763 419 pfam01938,pfam05958
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_00015 419 pfam01938,pfam05958
Syntrophomonas palmitatica JCM14374 Spalm Spalm_01535 437 pfam01938,pfam05958
Syntrophomonas wolfei saponavida / SD2 Sws_02683 437 pfam01938,pfam05958
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_02264 419 pfam01938,pfam05958
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