Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide
enter a locus id, or use ?gbid= / ?gene_oid=

Ser_00939

smpp Syntrophomonas erecta DSM 16215
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
✕

Identity & position

Product
RtcB family protein
Gene
—
Location
NZ_CM128632.1:1,060,947–1,062,368 (+)   473 aa
Keys
gbid 946295   gene_oid 8030287563  

Domain architecture

Pfam domain
Pfam signature: pfam01139

Putative operon (same contig + strand, gap ≤ 50 bp)

Monocistronic at this threshold — no co-oriented neighbour within 50 bp. try gap = 300 bp

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

2 proteins across 2 genomes share architecture group #2298  pfam01139

GenomeLocusaaSP/TMPfam order
Syntrophomonas erecta DSM 16215 / GB-438 Ser_00939 ◀ 473 pfam01139
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_02401 473 pfam01139
↑ Top




v1.00 @copyright 2026 UCLA