Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide
enter a locus id, or use ?gbid= / ?gene_oid=

Ser_02012

smpp Syntrophomonas erecta DSM 16215
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
✕

Identity & position

Product
TolC family protein
Gene
—
Location
NZ_CM128632.1:2,211,031–2,212,254 (−)   407 aa
Keys
gbid 947372   gene_oid 8030288688   SignalP TM×1

Domain architecture

Pfam domain ▏signal peptide ▮ TM helix
Pfam signature: pfam02321,pfam02321

Putative operon (same contig + strand, gap ≤ 50 bp)

Monocistronic at this threshold — no co-oriented neighbour within 50 bp. try gap = 300 bp

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

5 proteins across 5 genomes share architecture group #100  pfam02321,pfam02321

GenomeLocusaaSP/TMPfam order
Syntrophomonas erecta DSM 16215 / GB-438 Ser_02012 ◀ 407 SPTM pfam02321,pfam02321
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_01250 407 SPTM pfam02321,pfam02321
Syntrophomonas palmitatica JCM14374 Spalm Spalm_00768 373 SPTM pfam02321,pfam02321
Syntrophomonas wolfei methylbutyratica 4J5 Swm_00133 400 SPTM pfam02321,pfam02321
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_00132 394 SPTM pfam02321,pfam02321
↑ Top




v1.00 @copyright 2026 UCLA