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◀ domain architecture  ·  operons  ·  ❔ guide
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Ser_02302

smpp Syntrophomonas erecta DSM 16215
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
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Identity & position

Product
DNA-directed RNA polymerase subunit beta
Gene
rpoB
Location
NZ_CM128632.1:2,516,098–2,519,475 (+)   1125 aa
Keys
gbid 947659   gene_oid 8030289008  

Domain architecture

Pfam domain
Pfam signature: pfam04563,pfam04561,pfam04565,pfam10385,pfam00562,pfam04560

Putative operon (same contig + strand, gap ≤ 50 bp)

Monocistronic at this threshold — no co-oriented neighbour within 50 bp. try gap = 300 bp

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

7 proteins across 7 genomes share architecture group #1269  pfam00562,pfam04560,pfam04561,pfam04563,pfam04565,pfam10385

GenomeLocusaaSP/TMPfam order
Syntrophomonas erecta DSM 16215 / GB-438 Ser_02302 ◀ 1125 pfam04563,pfam04561,pfam04565,pfam10385,pfam00562,pfam04560
Syntrophomonas curvata DSM15682 / GL#14 Scur_02722 1122 pfam04563,pfam04561,pfam04565,pfam10385,pfam00562,pfam04560
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_00903 1125 pfam04563,pfam04561,pfam04565,pfam10385,pfam00562,pfam04560
Syntrophomonas wolfei saponavida / SD2 Sws_00949 1153 pfam04563,pfam04561,pfam04565,pfam10385,pfam00562,pfam04560
Syntrophomonas wolfei methylbutyratica 4J5 Swm_02746 1109 pfam04563,pfam04561,pfam04565,pfam10385,pfam00562,pfam04560
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_02388 1107 pfam04563,pfam04561,pfam04565,pfam10385,pfam00562,pfam04560
Syntrophomonas zehnderi OL-4 Szehn Szeh_01080 1139 pfam04563,pfam04561,pfam04565,pfam10385,pfam00562,pfam04560
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