Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide
enter a locus id, or use ?gbid= / ?gene_oid=

Sws_02554

smpp Syntrophomonas wolfei saponavida
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
✕

Identity & position

Product
ribonuclease Y
Gene
rny
Location
NZ_CM161535.1:2,752,859–2,754,388 (+)   509 aa
Keys
gbid 1720253   gene_oid 8099424559  

Domain architecture

Pfam domain
Pfam signature: pfam12072,pfam00013,pfam01966

Putative operon (same contig + strand, gap ≤ 300 bp)

Sws_02554 ◀ Sws_02555 Sws_02556 Sws_02557 Sws_02558 Sws_02559 Sws_02560 Sws_02561 Sws_02562 Sws_02563 Sws_02564 Sws_02565 Sws_02566 Sws_02567 Sws_02568 Sws_02569 Sws_02570 Sws_02571 Sws_02572 Sws_02573 Sws_02574 Sws_02575 Sws_02576 Sws_02577 Sws_02578 Sws_02579 Sws_02580 Sws_02581 Sws_02582 Sws_02583 Sws_02584   → reaction activity for this operon

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

5 proteins across 5 genomes share architecture group #1566  pfam00013,pfam01966,pfam12072

GenomeLocusaaSP/TMPfam order
Syntrophomonas wolfei saponavida / SD2 Sws_02554 ◀ 509 pfam12072,pfam00013,pfam01966
Syntrophomonas curvata DSM15682 / GL#14 Scur_01631 512 pfam12072,pfam00013,pfam01966
Syntrophomonas palmitatica JCM14374 Spalm Spalm_01136 505 TM pfam12072,pfam00013,pfam01966
Syntrophomonas wolfei methylbutyratica 4J5 Swm_01404 515 TM pfam12072,pfam00013,pfam01966
Syntrophomonas zehnderi OL-4 Szehn Szeh_01756 513 TM pfam12072,pfam00013,pfam01966
↑ Top




v1.00 @copyright 2026 UCLA