Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide
enter a locus id, or use ?gbid= / ?gene_oid=

Swm_01999

smpp Syntrophomonas wolfei methylbutyratica 4J5
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
✕

Identity & position

Product
efflux RND transporter permease subunit
Gene
—
Location
NZ_CM161534.1:2,206,726–2,207,544 (+)   272 aa
Keys
gbid 939212   gene_oid 8108584199  

Domain architecture

Pfam domain
Pfam signature: pfam00873

Putative operon (same contig + strand, gap ≤ 300 bp)

Monocistronic at this threshold — no co-oriented neighbour within 300 bp. try gap = 300 bp

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

16 proteins across 8 genomes share architecture group #123  pfam00873

GenomeLocusaaSP/TMPfam order
Syntrophomonas wolfei methylbutyratica 4J5 Swm_00158 1034 TM pfam00873
Syntrophomonas wolfei methylbutyratica 4J5 Swm_01258 1009 TM pfam00873
Syntrophomonas wolfei methylbutyratica 4J5 Swm_01999 ◀ 272 pfam00873
Syntrophomonas wolfei methylbutyratica 4J5 Swm_02351 144 TM pfam00873
Syntrophomonas curvata DSM15682 / GL#14 Scur_00240 1045 pfam00873
Syntrophomonas erecta DSM 16215 / GB-438 Ser_00932 1046 TM pfam00873
Syntrophomonas erecta DSM 16215 / GB-438 Ser_02010 1044 TM pfam00873
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_01252 1044 TM pfam00873
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_02408 1046 TM pfam00873
Syntrophomonas palmitatica JCM14374 Spalm Spalm_00770 1046 TM pfam00873
Syntrophomonas wolfei saponavida / SD2 Sws_00824 1038 TM pfam00873
Syntrophomonas wolfei saponavida / SD2 Sws_01296 1041 TM pfam00873
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_00172 1034 TM pfam00873
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_01123 1009 TM pfam00873
Syntrophomonas zehnderi OL-4 Szehn Szeh_00498 1047 TM pfam00873
Syntrophomonas zehnderi OL-4 Szehn Szeh_01123 1004 TM pfam00873
↑ Top




v1.00 @copyright 2026 UCLA