Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide
enter a locus id, or use ?gbid= / ?gene_oid=

Ser_00763

smpp Syntrophomonas erecta DSM 16215
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
✕

Identity & position

Product
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
Gene
rlmD
Location
NZ_CM128632.1:863,905–865,164 (+)   419 aa
Keys
gbid 946113   gene_oid 8030287375  

Domain architecture

Pfam domain
Pfam signature: pfam01938,pfam05958

Putative operon (same contig + strand, gap ≤ 300 bp)

Monocistronic at this threshold — no co-oriented neighbour within 300 bp. try gap = 300 bp

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

7 proteins across 7 genomes share architecture group #1207  pfam01938,pfam05958

GenomeLocusaaSP/TMPfam order
Syntrophomonas erecta DSM 16215 / GB-438 Ser_00763 ◀ 419 pfam01938,pfam05958
Syntrophomonas curvata DSM15682 / GL#14 Scur_01408 421 pfam01938,pfam05958
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_00015 419 pfam01938,pfam05958
Syntrophomonas palmitatica JCM14374 Spalm Spalm_01535 437 pfam01938,pfam05958
Syntrophomonas wolfei saponavida / SD2 Sws_02683 437 pfam01938,pfam05958
Syntrophomonas wolfei methylbutyratica 4J5 Swm_02624 419 pfam01938,pfam05958
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_02264 419 pfam01938,pfam05958
↑ Top




v1.00 @copyright 2026 UCLA