Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide
enter a locus id, or use ?gbid= / ?gene_oid=

Sws_00500

smpp Syntrophomonas wolfei saponavida
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
✕

Identity & position

Product
alanine--tRNA ligase
Gene
alaS
Location
NZ_CM161535.1:525,592–528,237 (−)   881 aa
Keys
gbid 1718179   gene_oid 8099422329  

Domain architecture

Pfam domain
Pfam signature: pfam01411,pfam07973,pfam02272

Putative operon (same contig + strand, gap ≤ 50 bp)

Monocistronic at this threshold — no co-oriented neighbour within 50 bp. try gap = 300 bp

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

8 proteins across 8 genomes share architecture group #307  pfam01411,pfam02272,pfam07973

GenomeLocusaaSP/TMPfam order
Syntrophomonas wolfei saponavida / SD2 Sws_00500 ◀ 881 pfam01411,pfam07973,pfam02272
Syntrophomonas curvata DSM15682 / GL#14 Scur_00927 878 pfam01411,pfam07973,pfam02272
Syntrophomonas erecta DSM 16215 / GB-438 Ser_00447 879 pfam01411,pfam07973,pfam02272
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_00321 879 pfam01411,pfam07973,pfam02272
Syntrophomonas palmitatica JCM14374 Spalm Spalm_01427 878 pfam01411,pfam07973,pfam02272
Syntrophomonas wolfei methylbutyratica 4J5 Swm_00480 880 pfam01411,pfam07973,pfam02272
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_00457 880 pfam01411,pfam07973,pfam02272
Syntrophomonas zehnderi OL-4 Szehn Szeh_00664 879 pfam01411,pfam07973,pfam02272
↑ Top




v1.00 @copyright 2026 UCLA