Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide
enter a locus id, or use ?gbid= / ?gene_oid=

Spalm_00254

smpp Syntrophomonas palmitatica JCM14374 Spalm
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
✕

Identity & position

Product
PD-(D/E)XK nuclease family protein
Gene
—
Location
NZ_BBCE01000002.1:16,775–16,921 (+)   48 aa
Keys
gbid 1775607   gene_oid 2731398592  

Domain architecture

Pfam domain
Pfam signature: pfam12705

Putative operon (same contig + strand, gap ≤ 50 bp)

Spalm_00251 Spalm_00252 Spalm_00253 Spalm_00254 ◀   → reaction activity for this operon

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

4 proteins across 2 genomes share architecture group #2427  pfam12705

GenomeLocusaaSP/TMPfam order
Syntrophomonas palmitatica JCM14374 Spalm Spalm_00254 ◀ 48 pfam12705
Syntrophomonas palmitatica JCM14374 Spalm Spalm_00255 255 pfam12705
Syntrophomonas palmitatica JCM14374 Spalm Spalm_01472 155 pfam12705
Syntrophomonas wolfei saponavida / SD2 Sws_00010 347 pfam12705
↑ Top




v1.00 @copyright 2026 UCLA