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◀ domain architecture  ·  operons  ·  ❔ guide
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Spalm_00627

smpp Syntrophomonas palmitatica JCM14374 Spalm
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
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Identity & position

Product
23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH
Gene
rlmH
Location
NZ_BBCE01000004.1:33,293–33,772 (+)   159 aa
Keys
gbid 1776026   gene_oid 2731399026  

Domain architecture

Pfam domain
Pfam signature: pfam02590

Putative operon (same contig + strand, gap ≤ 50 bp)

Monocistronic at this threshold — no co-oriented neighbour within 50 bp. try gap = 300 bp

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

8 proteins across 8 genomes share architecture group #1335  pfam02590

GenomeLocusaaSP/TMPfam order
Syntrophomonas palmitatica JCM14374 Spalm Spalm_00627 ◀ 159 pfam02590
Syntrophomonas curvata DSM15682 / GL#14 Scur_02841 159 pfam02590
Syntrophomonas erecta DSM 16215 / GB-438 Ser_02196 160 pfam02590
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_01015 160 pfam02590
Syntrophomonas wolfei saponavida / SD2 Sws_01042 159 pfam02590
Syntrophomonas wolfei methylbutyratica 4J5 Swm_02882 159 pfam02590
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_02513 159 pfam02590
Syntrophomonas zehnderi OL-4 Szehn Szeh_00159 174 pfam02590
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