Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide
enter a locus id, or use ?gbid= / ?gene_oid=

Spalm_01144

smpp Syntrophomonas palmitatica JCM14374 Spalm
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
✕

Identity & position

Product
30S ribosomal protein S12 methylthiotransferase RimO
Gene
rimO
Location
NZ_BBCE01000008.1:49,916–51,253 (−)   445 aa
Keys
gbid 1776413   gene_oid 2731399646  

Domain architecture

Pfam domain
Pfam signature: pfam00919,pfam04055,pfam18693

Putative operon (same contig + strand, gap ≤ 50 bp)

Spalm_01143 Spalm_01144 ◀ Spalm_01145   → reaction activity for this operon

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

8 proteins across 8 genomes share architecture group #766  pfam00919,pfam04055,pfam18693

GenomeLocusaaSP/TMPfam order
Syntrophomonas palmitatica JCM14374 Spalm Spalm_01144 ◀ 445 pfam00919,pfam04055,pfam18693
Syntrophomonas curvata DSM15682 / GL#14 Scur_01639 444 pfam00919,pfam04055,pfam18693
Syntrophomonas erecta DSM 16215 / GB-438 Ser_00573 444 pfam00919,pfam04055,pfam18693
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_00196 444 pfam00919,pfam04055,pfam18693
Syntrophomonas wolfei saponavida / SD2 Sws_02544 445 pfam00919,pfam04055,pfam18693
Syntrophomonas wolfei methylbutyratica 4J5 Swm_01416 439 pfam00919,pfam04055,pfam18693
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_01273 439 pfam00919,pfam04055,pfam18693
Syntrophomonas zehnderi OL-4 Szehn Szeh_01749 448 pfam00919,pfam04055,pfam18693
↑ Top




v1.00 @copyright 2026 UCLA