Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide
enter a locus id, or use ?gbid= / ?gene_oid=

Szeh_01562

smpp Syntrophomonas zehnderi OL-4 Szehn
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
✕

Identity & position

Product
tRNA pseudouridine(55) synthase TruB
Gene
truB
Location
NZ_CGIH01000027.1:120,819–121,730 (+)   303 aa
Keys
gbid 1785487   gene_oid 2677389456  

Domain architecture

Pfam domain
Pfam signature: pfam01509,pfam16198

Putative operon (same contig + strand, gap ≤ 50 bp)

Szeh_01560 Szeh_01561 Szeh_01562 ◀   → reaction activity for this operon

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

4 proteins across 4 genomes share architecture group #1504  pfam01509,pfam16198

GenomeLocusaaSP/TMPfam order
Syntrophomonas zehnderi OL-4 Szehn Szeh_01562 ◀ 303 pfam01509,pfam16198
Syntrophomonas curvata DSM15682 / GL#14 Scur_01263 299 pfam01509,pfam16198
Syntrophomonas wolfei saponavida / SD2 Sws_00090 297 pfam01509,pfam16198
Syntrophomonas wolfei methylbutyratica 4J5 Swm_00982 298 pfam01509,pfam16198
↑ Top




v1.00 @copyright 2026 UCLA