Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide
enter a locus id, or use ?gbid= / ?gene_oid=

Swm_00465

smpp Syntrophomonas wolfei methylbutyratica 4J5
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
✕

Identity & position

Product
ribonuclease PH
Gene
rph
Location
NZ_CM161534.1:538,834–539,553 (+)   239 aa
Keys
gbid 937650   gene_oid 8108582556  

Domain architecture

Pfam domain
Pfam signature: pfam01138,pfam03725

Putative operon (same contig + strand, gap ≤ 50 bp)

Swm_00465 ◀ Swm_00466 Swm_00467   → reaction activity for this operon

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

8 proteins across 8 genomes share architecture group #297  pfam01138,pfam03725

GenomeLocusaaSP/TMPfam order
Syntrophomonas wolfei methylbutyratica 4J5 Swm_00465 ◀ 239 pfam01138,pfam03725
Syntrophomonas curvata DSM15682 / GL#14 Scur_00883 241 pfam01138,pfam03725
Syntrophomonas erecta DSM 16215 / GB-438 Ser_00420 239 pfam01138,pfam03725
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_00348 239 pfam01138,pfam03725
Syntrophomonas palmitatica JCM14374 Spalm Spalm_01396 244 pfam01138,pfam03725
Syntrophomonas wolfei saponavida / SD2 Sws_00518 239 pfam01138,pfam03725
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_00442 239 pfam01138,pfam03725
Syntrophomonas zehnderi OL-4 Szehn Szeh_00721 253 pfam01138,pfam03725
↑ Top




v1.00 @copyright 2026 UCLA