Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide
enter a locus id, or use ?gbid= / ?gene_oid=

Ser_01440

smpp Syntrophomonas erecta DSM 16215
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
✕

Identity & position

Product
protein translocase subunit SecD
Gene
secD
Location
NZ_CM128632.1:1,585,370–1,586,575 (−)   401 aa
Keys
gbid 946805   gene_oid 8030288097   TM×5

Domain architecture

Pfam domain ▮ TM helix
Pfam signature: pfam22599,pfam03176

Putative operon (same contig + strand, gap ≤ 50 bp)

Ser_01439 Ser_01440 ◀ Ser_01441 Ser_01442   → reaction activity for this operon

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

3 proteins across 3 genomes share architecture group #2321  pfam03176,pfam22599

GenomeLocusaaSP/TMPfam order
Syntrophomonas erecta DSM 16215 / GB-438 Ser_01440 ◀ 401 TM pfam22599,pfam03176
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_01887 401 TM pfam22599,pfam03176
Syntrophomonas wolfei saponavida / SD2 Sws_02077 401 TM pfam22599,pfam03176
↑ Top




v1.00 @copyright 2026 UCLA