Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide

Operon NZ_CM161535.1:3,076,669–3,081,826

Syntrophomonas wolfei saponavida · 4 genes
4
genes
2
KO-annotated
4
reactions
2
pathways

Activity by pathway — click to expand; ranked by genes involved

Porphyrin metabolismMetabolism; Metabolism of cofactors and vitamins1 genes · 3 rxns
Sws_02858 K04034 bchE R06268
Magnesium protoporphyrin monomethyl ester + S-Adenosyl-L-methionine + H2O <=> 13(1)-Hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester + 5'-Deoxyadenosine + L-Methionine
magnesium-protoporphyrin-IX 13-monomethyl ester,S-adenosyl-L-methionine:H2O oxidoreductase (hydroxylating)
Sws_02858 K04034 bchE R06269
13(1)-Hydroxy-magnesium-protoporphyrin IX 13-monomethyl ester + S-Adenosyl-L-methionine <=> 13(1)-Oxo-magnesium-protoporphyrin IX 13-monomethyl ester + 5'-Deoxyadenosine + L-Methionine
magnesium-protoporphyrin-IX 13-monomethyl ester,S-adenosyl-L-methionine:H2O oxidoreductase (hydroxylating)
Sws_02858 K04034 bchE R06270
13(1)-Oxo-magnesium-protoporphyrin IX 13-monomethyl ester + S-Adenosyl-L-methionine <=> Divinylprotochlorophyllide + 5'-Deoxyadenosine + L-Methionine
magnesium-protoporphyrin-IX 13-monomethyl ester,S-adenosyl-L-methionine:H2O oxidoreductase (hydroxylating)
Lysine biosynthesisMetabolism; Amino acid metabolism1 genes · 1 rxns
Sws_02859 K03340 dapdh R02755
meso-2,6-Diaminoheptanedioate + NADP+ + H2O <=> L-2-Amino-6-oxoheptanedioate + Ammonia + NADPH + H+
meso-2,6-diaminoheptanedioate:NADP+ oxidoreductase (deaminating)

Overview / global maps (every metabolic gene maps here)

Biosynthesis of secondary metabolites 2 genes
Sws_02858 Sws_02859
Metabolic pathways 2 genes
Sws_02858 Sws_02859
Biosynthesis of amino acids 1 genes
Sws_02859

Reaction network — compounds linked by the reactions these genes catalyse

drag nodes · click an edge for the reaction

Genes

LocusProductKOECReactions
Sws_02856 nickel-dependent malate racemase, LarAH6 family — — —
Sws_02857 UDP-N-acetylmuramate dehydrogenase — — —
Sws_02858 B12-binding domain-containing radical SAM protein K04034 bchE 1.21.98.3 R06268,R06269,R06270
Sws_02859 diaminopimelate dehydrogenase K03340 dapdh 1.4.1.16 R02755
↑ Top




v1.00 @copyright 2026 UCLA