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Swm_00501

smpp Syntrophomonas wolfei methylbutyratica 4J5
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶

Identity & position

Product
sigma-70 family RNA polymerase sigma factor
Gene
Location
NZ_CM161534.1:575,760–576,170 (+)   136 aa
Keys
gbid 937687   gene_oid 8108582593   TM×1

Domain architecture

Pfam domain ▮ TM helix
Pfam signature: pfam04542

Putative operon (same contig + strand, gap ≤ 50 bp)

Monocistronic at this threshold — no co-oriented neighbour within 50 bp. try gap = 300 bp

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

11 proteins across 8 genomes share architecture group #330  pfam04542

GenomeLocusaaSP/TMPfam order
Syntrophomonas wolfei methylbutyratica 4J5 Swm_00501 136 TM pfam04542
Syntrophomonas curvata DSM15682 / GL#14 Scur_01727 234 pfam04542
Syntrophomonas erecta DSM 16215 / GB-438 Ser_00512 243 pfam04542
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_00257 243 pfam04542
Syntrophomonas palmitatica JCM14374 Spalm Spalm_01439 127 TM pfam04542
Syntrophomonas palmitatica JCM14374 Spalm Spalm_01554 117 pfam04542
Syntrophomonas palmitatica JCM14374 Spalm Spalm_02206 186 pfam04542
Syntrophomonas wolfei saponavida / SD2 Sws_02347 243 pfam04542
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_00492 126 TM pfam04542
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_00943 259 pfam04542
Syntrophomonas zehnderi OL-4 Szehn Szeh_00654 133 TM pfam04542
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